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LLRHNet: Multiple Lesions Segmentation Using Local-Long Range Features

The encoder-decoder-based deep convolutional neural networks (CNNs) have made great improvements in medical image segmentation tasks. However, due to the inherent locality of convolution, CNNs generally are demonstrated to have limitations in obtaining features across layers and long-range features...

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Autores principales: Liu, Liangliang, Wang, Ying, Chang, Jing, Zhang, Pei, Liang, Gongbo, Zhang, Hui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9119082/
https://www.ncbi.nlm.nih.gov/pubmed/35600503
http://dx.doi.org/10.3389/fninf.2022.859973
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author Liu, Liangliang
Wang, Ying
Chang, Jing
Zhang, Pei
Liang, Gongbo
Zhang, Hui
author_facet Liu, Liangliang
Wang, Ying
Chang, Jing
Zhang, Pei
Liang, Gongbo
Zhang, Hui
author_sort Liu, Liangliang
collection PubMed
description The encoder-decoder-based deep convolutional neural networks (CNNs) have made great improvements in medical image segmentation tasks. However, due to the inherent locality of convolution, CNNs generally are demonstrated to have limitations in obtaining features across layers and long-range features from the medical image. In this study, we develop a local-long range hybrid features network (LLRHNet), which inherits the merits of the iterative aggregation mechanism and the transformer technology, as a medical image segmentation model. LLRHNet adopts encoder-decoder architecture as the backbone which iteratively aggregates the projection and up-sampling to fuse local low-high resolution features across isolated layers. The transformer adopts the multi-head self-attention mechanism to extract long-range features from the tokenized image patches and fuses these features with the local-range features extracted by down-sampling operation in the backbone network. These hybrid features are used to assist the cascaded up-sampling operations to local the position of the target tissues. LLRHNet is evaluated on two multiple lesions medical image data sets, including a public liver-related segmentation data set (3DIRCADb) and an in-house stroke and white matter hyperintensity (SWMH) segmentation data set. Experimental results denote that LLRHNet achieves state-of-the-art performance on both data sets.
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spelling pubmed-91190822022-05-20 LLRHNet: Multiple Lesions Segmentation Using Local-Long Range Features Liu, Liangliang Wang, Ying Chang, Jing Zhang, Pei Liang, Gongbo Zhang, Hui Front Neuroinform Neuroscience The encoder-decoder-based deep convolutional neural networks (CNNs) have made great improvements in medical image segmentation tasks. However, due to the inherent locality of convolution, CNNs generally are demonstrated to have limitations in obtaining features across layers and long-range features from the medical image. In this study, we develop a local-long range hybrid features network (LLRHNet), which inherits the merits of the iterative aggregation mechanism and the transformer technology, as a medical image segmentation model. LLRHNet adopts encoder-decoder architecture as the backbone which iteratively aggregates the projection and up-sampling to fuse local low-high resolution features across isolated layers. The transformer adopts the multi-head self-attention mechanism to extract long-range features from the tokenized image patches and fuses these features with the local-range features extracted by down-sampling operation in the backbone network. These hybrid features are used to assist the cascaded up-sampling operations to local the position of the target tissues. LLRHNet is evaluated on two multiple lesions medical image data sets, including a public liver-related segmentation data set (3DIRCADb) and an in-house stroke and white matter hyperintensity (SWMH) segmentation data set. Experimental results denote that LLRHNet achieves state-of-the-art performance on both data sets. Frontiers Media S.A. 2022-05-05 /pmc/articles/PMC9119082/ /pubmed/35600503 http://dx.doi.org/10.3389/fninf.2022.859973 Text en Copyright © 2022 Liu, Wang, Chang, Zhang, Liang and Zhang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Liu, Liangliang
Wang, Ying
Chang, Jing
Zhang, Pei
Liang, Gongbo
Zhang, Hui
LLRHNet: Multiple Lesions Segmentation Using Local-Long Range Features
title LLRHNet: Multiple Lesions Segmentation Using Local-Long Range Features
title_full LLRHNet: Multiple Lesions Segmentation Using Local-Long Range Features
title_fullStr LLRHNet: Multiple Lesions Segmentation Using Local-Long Range Features
title_full_unstemmed LLRHNet: Multiple Lesions Segmentation Using Local-Long Range Features
title_short LLRHNet: Multiple Lesions Segmentation Using Local-Long Range Features
title_sort llrhnet: multiple lesions segmentation using local-long range features
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9119082/
https://www.ncbi.nlm.nih.gov/pubmed/35600503
http://dx.doi.org/10.3389/fninf.2022.859973
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