virMine 2.0: Identifying Viral Sequences in Microbial Communities

Here, we present virMine 2.0, the next generation of the virMine software tool. virMine 2.0 uses an exclusion technique to remove nonviral data from sequencing reads and scores the remaining data based on relatedness to viral elements, eliminating the sole dependency on homology identification.

Detalles Bibliográficos
Autores principales: Johnson, Genevieve, Putonti, Catherine
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2022
Materias:
Databases and Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9119091/
https://www.ncbi.nlm.nih.gov/pubmed/35499341
http://dx.doi.org/10.1128/mra.00107-22
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author Johnson, Genevieve
Putonti, Catherine
author_facet Johnson, Genevieve
Putonti, Catherine
author_sort Johnson, Genevieve
collection PubMed
description Here, we present virMine 2.0, the next generation of the virMine software tool. virMine 2.0 uses an exclusion technique to remove nonviral data from sequencing reads and scores the remaining data based on relatedness to viral elements, eliminating the sole dependency on homology identification.
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spelling pubmed-91190912022-05-20 virMine 2.0: Identifying Viral Sequences in Microbial Communities Johnson, Genevieve Putonti, Catherine Microbiol Resour Announc Databases and Software Here, we present virMine 2.0, the next generation of the virMine software tool. virMine 2.0 uses an exclusion technique to remove nonviral data from sequencing reads and scores the remaining data based on relatedness to viral elements, eliminating the sole dependency on homology identification. American Society for Microbiology 2022-05-02 /pmc/articles/PMC9119091/ /pubmed/35499341 http://dx.doi.org/10.1128/mra.00107-22 Text en Copyright © 2022 Johnson and Putonti. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Databases and Software
Johnson, Genevieve
Putonti, Catherine
virMine 2.0: Identifying Viral Sequences in Microbial Communities
title virMine 2.0: Identifying Viral Sequences in Microbial Communities
title_full virMine 2.0: Identifying Viral Sequences in Microbial Communities
title_fullStr virMine 2.0: Identifying Viral Sequences in Microbial Communities
title_full_unstemmed virMine 2.0: Identifying Viral Sequences in Microbial Communities
title_short virMine 2.0: Identifying Viral Sequences in Microbial Communities
title_sort virmine 2.0: identifying viral sequences in microbial communities
topic Databases and Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9119091/
https://www.ncbi.nlm.nih.gov/pubmed/35499341
http://dx.doi.org/10.1128/mra.00107-22
work_keys_str_mv AT johnsongenevieve virmine20identifyingviralsequencesinmicrobialcommunities
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