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Clean and Safe Drinking Water Systems via Metagenomics Data and Artificial Intelligence: State-of-the-Art and Future Perspective

The use of next-generation sequencing technologies in drinking water distribution systems (DWDS) has shed insight into the microbial communities’ composition, and interaction in the drinking water microbiome. For the past two decades, various studies have been conducted in which metagenomics data ha...

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Autores principales: Mahajna, Asala, Dinkla, Inez J. T., Euverink, Gert Jan W., Keesman, Karel J., Jayawardhana, Bayu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9121918/
https://www.ncbi.nlm.nih.gov/pubmed/35602066
http://dx.doi.org/10.3389/fmicb.2022.832452
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author Mahajna, Asala
Dinkla, Inez J. T.
Euverink, Gert Jan W.
Keesman, Karel J.
Jayawardhana, Bayu
author_facet Mahajna, Asala
Dinkla, Inez J. T.
Euverink, Gert Jan W.
Keesman, Karel J.
Jayawardhana, Bayu
author_sort Mahajna, Asala
collection PubMed
description The use of next-generation sequencing technologies in drinking water distribution systems (DWDS) has shed insight into the microbial communities’ composition, and interaction in the drinking water microbiome. For the past two decades, various studies have been conducted in which metagenomics data have been collected over extended periods and analyzed spatially and temporally to understand the dynamics of microbial communities in DWDS. In this literature review, we outline the findings which were reported in the literature on what kind of occupancy-abundance patterns are exhibited in the drinking water microbiome, how the drinking water microbiome dynamically evolves spatially and temporally in the distribution networks, how different microbial communities co-exist, and what kind of clusters exist in the drinking water ecosystem. While data analysis in the current literature concerns mainly with confirmatory and exploratory questions pertaining to the use of metagenomics data for the analysis of DWDS microbiome, we present also future perspectives and the potential role of artificial intelligence (AI) and mechanistic models to address the predictive and mechanistic questions. The integration of meta-omics, AI, and mechanistic models transcends metagenomics into functional metagenomics, enabling deterministic understanding and control of DWDS for clean and safe drinking water systems of the future.
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spelling pubmed-91219182022-05-21 Clean and Safe Drinking Water Systems via Metagenomics Data and Artificial Intelligence: State-of-the-Art and Future Perspective Mahajna, Asala Dinkla, Inez J. T. Euverink, Gert Jan W. Keesman, Karel J. Jayawardhana, Bayu Front Microbiol Microbiology The use of next-generation sequencing technologies in drinking water distribution systems (DWDS) has shed insight into the microbial communities’ composition, and interaction in the drinking water microbiome. For the past two decades, various studies have been conducted in which metagenomics data have been collected over extended periods and analyzed spatially and temporally to understand the dynamics of microbial communities in DWDS. In this literature review, we outline the findings which were reported in the literature on what kind of occupancy-abundance patterns are exhibited in the drinking water microbiome, how the drinking water microbiome dynamically evolves spatially and temporally in the distribution networks, how different microbial communities co-exist, and what kind of clusters exist in the drinking water ecosystem. While data analysis in the current literature concerns mainly with confirmatory and exploratory questions pertaining to the use of metagenomics data for the analysis of DWDS microbiome, we present also future perspectives and the potential role of artificial intelligence (AI) and mechanistic models to address the predictive and mechanistic questions. The integration of meta-omics, AI, and mechanistic models transcends metagenomics into functional metagenomics, enabling deterministic understanding and control of DWDS for clean and safe drinking water systems of the future. Frontiers Media S.A. 2022-05-05 /pmc/articles/PMC9121918/ /pubmed/35602066 http://dx.doi.org/10.3389/fmicb.2022.832452 Text en Copyright © 2022 Mahajna, Dinkla, Euverink, Keesman and Jayawardhana. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Mahajna, Asala
Dinkla, Inez J. T.
Euverink, Gert Jan W.
Keesman, Karel J.
Jayawardhana, Bayu
Clean and Safe Drinking Water Systems via Metagenomics Data and Artificial Intelligence: State-of-the-Art and Future Perspective
title Clean and Safe Drinking Water Systems via Metagenomics Data and Artificial Intelligence: State-of-the-Art and Future Perspective
title_full Clean and Safe Drinking Water Systems via Metagenomics Data and Artificial Intelligence: State-of-the-Art and Future Perspective
title_fullStr Clean and Safe Drinking Water Systems via Metagenomics Data and Artificial Intelligence: State-of-the-Art and Future Perspective
title_full_unstemmed Clean and Safe Drinking Water Systems via Metagenomics Data and Artificial Intelligence: State-of-the-Art and Future Perspective
title_short Clean and Safe Drinking Water Systems via Metagenomics Data and Artificial Intelligence: State-of-the-Art and Future Perspective
title_sort clean and safe drinking water systems via metagenomics data and artificial intelligence: state-of-the-art and future perspective
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9121918/
https://www.ncbi.nlm.nih.gov/pubmed/35602066
http://dx.doi.org/10.3389/fmicb.2022.832452
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