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A lightweight deep learning model for automatic segmentation and analysis of ophthalmic images
Detection, diagnosis, and treatment of ophthalmic diseases depend on extraction of information (features and/or their dimensions) from the images. Deep learning (DL) model are crucial for the automation of it. Here, we report on the development of a lightweight DL model, which can precisely segment/...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9122907/ https://www.ncbi.nlm.nih.gov/pubmed/35595784 http://dx.doi.org/10.1038/s41598-022-12486-w |
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author | Sharma, Parmanand Ninomiya, Takahiro Omodaka, Kazuko Takahashi, Naoki Miya, Takehiro Himori, Noriko Okatani, Takayuki Nakazawa, Toru |
author_facet | Sharma, Parmanand Ninomiya, Takahiro Omodaka, Kazuko Takahashi, Naoki Miya, Takehiro Himori, Noriko Okatani, Takayuki Nakazawa, Toru |
author_sort | Sharma, Parmanand |
collection | PubMed |
description | Detection, diagnosis, and treatment of ophthalmic diseases depend on extraction of information (features and/or their dimensions) from the images. Deep learning (DL) model are crucial for the automation of it. Here, we report on the development of a lightweight DL model, which can precisely segment/detect the required features automatically. The model utilizes dimensionality reduction of image to extract important features, and channel contraction to allow only the required high-level features necessary for reconstruction of segmented feature image. Performance of present model in detection of glaucoma from optical coherence tomography angiography (OCTA) images of retina is high (area under the receiver-operator characteristic curve AUC ~ 0.81). Bland–Altman analysis gave exceptionally low bias (~ 0.00185), and high Pearson’s correlation coefficient (p = 0.9969) between the parameters determined from manual and DL based segmentation. On the same dataset, bias is an order of magnitude higher (~ 0.0694, p = 0.8534) for commercial software. Present model is 10 times lighter than Unet (popular for biomedical image segmentation) and have a better segmentation accuracy and model training reproducibility (based on the analysis of 3670 OCTA images). High dice similarity coefficient (D) for variety of ophthalmic images suggested it’s wider scope in precise segmentation of images even from other fields. Our concept of channel narrowing is not only important for the segmentation problems, but it can also reduce number of parameters significantly in object classification models. Enhanced disease diagnostic accuracy can be achieved for the resource limited devices (such as mobile phone, Nvidia’s Jetson, Raspberry pi) used in self-monitoring, and tele-screening (memory size of trained model ~ 35 MB). |
format | Online Article Text |
id | pubmed-9122907 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-91229072022-05-22 A lightweight deep learning model for automatic segmentation and analysis of ophthalmic images Sharma, Parmanand Ninomiya, Takahiro Omodaka, Kazuko Takahashi, Naoki Miya, Takehiro Himori, Noriko Okatani, Takayuki Nakazawa, Toru Sci Rep Article Detection, diagnosis, and treatment of ophthalmic diseases depend on extraction of information (features and/or their dimensions) from the images. Deep learning (DL) model are crucial for the automation of it. Here, we report on the development of a lightweight DL model, which can precisely segment/detect the required features automatically. The model utilizes dimensionality reduction of image to extract important features, and channel contraction to allow only the required high-level features necessary for reconstruction of segmented feature image. Performance of present model in detection of glaucoma from optical coherence tomography angiography (OCTA) images of retina is high (area under the receiver-operator characteristic curve AUC ~ 0.81). Bland–Altman analysis gave exceptionally low bias (~ 0.00185), and high Pearson’s correlation coefficient (p = 0.9969) between the parameters determined from manual and DL based segmentation. On the same dataset, bias is an order of magnitude higher (~ 0.0694, p = 0.8534) for commercial software. Present model is 10 times lighter than Unet (popular for biomedical image segmentation) and have a better segmentation accuracy and model training reproducibility (based on the analysis of 3670 OCTA images). High dice similarity coefficient (D) for variety of ophthalmic images suggested it’s wider scope in precise segmentation of images even from other fields. Our concept of channel narrowing is not only important for the segmentation problems, but it can also reduce number of parameters significantly in object classification models. Enhanced disease diagnostic accuracy can be achieved for the resource limited devices (such as mobile phone, Nvidia’s Jetson, Raspberry pi) used in self-monitoring, and tele-screening (memory size of trained model ~ 35 MB). Nature Publishing Group UK 2022-05-20 /pmc/articles/PMC9122907/ /pubmed/35595784 http://dx.doi.org/10.1038/s41598-022-12486-w Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Sharma, Parmanand Ninomiya, Takahiro Omodaka, Kazuko Takahashi, Naoki Miya, Takehiro Himori, Noriko Okatani, Takayuki Nakazawa, Toru A lightweight deep learning model for automatic segmentation and analysis of ophthalmic images |
title | A lightweight deep learning model for automatic segmentation and analysis of ophthalmic images |
title_full | A lightweight deep learning model for automatic segmentation and analysis of ophthalmic images |
title_fullStr | A lightweight deep learning model for automatic segmentation and analysis of ophthalmic images |
title_full_unstemmed | A lightweight deep learning model for automatic segmentation and analysis of ophthalmic images |
title_short | A lightweight deep learning model for automatic segmentation and analysis of ophthalmic images |
title_sort | lightweight deep learning model for automatic segmentation and analysis of ophthalmic images |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9122907/ https://www.ncbi.nlm.nih.gov/pubmed/35595784 http://dx.doi.org/10.1038/s41598-022-12486-w |
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