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Systematic Comparison of Genetic Algorithm and Basin Hopping Approaches to the Global Optimization of Si(111) Surface Reconstructions
[Image: see text] We present a systematic study of two widely used material structure prediction methods, the Genetic Algorithm and Basin Hopping approaches to global optimization, in a search for the 3 × 3, 5 × 5, and 7 × 7 reconstructions of the Si(111) surface. The Si(111) 7 × 7 reconstruction is...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9126620/ https://www.ncbi.nlm.nih.gov/pubmed/35522778 http://dx.doi.org/10.1021/acs.jpca.2c00647 |
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author | Bauer, Maximilian N. Probert, Matt I. J. Panosetti, Chiara |
author_facet | Bauer, Maximilian N. Probert, Matt I. J. Panosetti, Chiara |
author_sort | Bauer, Maximilian N. |
collection | PubMed |
description | [Image: see text] We present a systematic study of two widely used material structure prediction methods, the Genetic Algorithm and Basin Hopping approaches to global optimization, in a search for the 3 × 3, 5 × 5, and 7 × 7 reconstructions of the Si(111) surface. The Si(111) 7 × 7 reconstruction is the largest and most complex surface reconstruction known, and finding it is a very exacting test for global optimization methods. In this paper, we introduce a modification to previous Genetic Algorithm work on structure search for periodic systems, to allow the efficient search for surface reconstructions, and present a rigorous study of the effect of the different parameters of the algorithm. We also perform a detailed comparison with the recently improved Basin Hopping algorithm using Delocalized Internal Coordinates. Both algorithms succeeded in either resolving the 3 × 3, 5 × 5, and 7 × 7 DAS surface reconstructions or getting “sufficiently close”, i.e., identifying structures that only differ for the positions of a few atoms as well as thermally accessible structures within k(B)T/unit area of the global minimum, with T = 300 K. Overall, the Genetic Algorithm is more robust with respect to parameter choice and in success rate, while the Basin Hopping method occasionally exhibits some advantages in speed of convergence. In line with previous studies, the results confirm that robustness, success, and speed of convergence of either approach are strongly influenced by how much the trial moves tend to preserve favorable bonding patterns once these appear. |
format | Online Article Text |
id | pubmed-9126620 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-91266202022-05-24 Systematic Comparison of Genetic Algorithm and Basin Hopping Approaches to the Global Optimization of Si(111) Surface Reconstructions Bauer, Maximilian N. Probert, Matt I. J. Panosetti, Chiara J Phys Chem A [Image: see text] We present a systematic study of two widely used material structure prediction methods, the Genetic Algorithm and Basin Hopping approaches to global optimization, in a search for the 3 × 3, 5 × 5, and 7 × 7 reconstructions of the Si(111) surface. The Si(111) 7 × 7 reconstruction is the largest and most complex surface reconstruction known, and finding it is a very exacting test for global optimization methods. In this paper, we introduce a modification to previous Genetic Algorithm work on structure search for periodic systems, to allow the efficient search for surface reconstructions, and present a rigorous study of the effect of the different parameters of the algorithm. We also perform a detailed comparison with the recently improved Basin Hopping algorithm using Delocalized Internal Coordinates. Both algorithms succeeded in either resolving the 3 × 3, 5 × 5, and 7 × 7 DAS surface reconstructions or getting “sufficiently close”, i.e., identifying structures that only differ for the positions of a few atoms as well as thermally accessible structures within k(B)T/unit area of the global minimum, with T = 300 K. Overall, the Genetic Algorithm is more robust with respect to parameter choice and in success rate, while the Basin Hopping method occasionally exhibits some advantages in speed of convergence. In line with previous studies, the results confirm that robustness, success, and speed of convergence of either approach are strongly influenced by how much the trial moves tend to preserve favorable bonding patterns once these appear. American Chemical Society 2022-05-06 2022-05-19 /pmc/articles/PMC9126620/ /pubmed/35522778 http://dx.doi.org/10.1021/acs.jpca.2c00647 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Bauer, Maximilian N. Probert, Matt I. J. Panosetti, Chiara Systematic Comparison of Genetic Algorithm and Basin Hopping Approaches to the Global Optimization of Si(111) Surface Reconstructions |
title | Systematic Comparison of Genetic Algorithm and Basin
Hopping Approaches to the Global Optimization of Si(111) Surface Reconstructions |
title_full | Systematic Comparison of Genetic Algorithm and Basin
Hopping Approaches to the Global Optimization of Si(111) Surface Reconstructions |
title_fullStr | Systematic Comparison of Genetic Algorithm and Basin
Hopping Approaches to the Global Optimization of Si(111) Surface Reconstructions |
title_full_unstemmed | Systematic Comparison of Genetic Algorithm and Basin
Hopping Approaches to the Global Optimization of Si(111) Surface Reconstructions |
title_short | Systematic Comparison of Genetic Algorithm and Basin
Hopping Approaches to the Global Optimization of Si(111) Surface Reconstructions |
title_sort | systematic comparison of genetic algorithm and basin
hopping approaches to the global optimization of si(111) surface reconstructions |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9126620/ https://www.ncbi.nlm.nih.gov/pubmed/35522778 http://dx.doi.org/10.1021/acs.jpca.2c00647 |
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