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Autophagy-Related Genes Are Involved in the Progression and Prognosis of Asthma and Regulate the Immune Microenvironment
BACKGROUND: Autophagy has been proven to play an important role in the pathogenesis of asthma and the regulation of the airway epithelial immune microenvironment. However, a systematic analysis of the clinical importance of autophagy-related genes (ARGs) regulating the immune microenvironment in pat...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9127139/ https://www.ncbi.nlm.nih.gov/pubmed/35619697 http://dx.doi.org/10.3389/fimmu.2022.897835 |
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author | Yang, Fan Kong, Jingwei Zong, Yuhan Li, Zhuqing Lyu, Mingsheng Li, Wanyang Li, Wenle Zhu, Haoyue Chen, Shunqi Zhao, Xiaoshan Wang, Ji |
author_facet | Yang, Fan Kong, Jingwei Zong, Yuhan Li, Zhuqing Lyu, Mingsheng Li, Wanyang Li, Wenle Zhu, Haoyue Chen, Shunqi Zhao, Xiaoshan Wang, Ji |
author_sort | Yang, Fan |
collection | PubMed |
description | BACKGROUND: Autophagy has been proven to play an important role in the pathogenesis of asthma and the regulation of the airway epithelial immune microenvironment. However, a systematic analysis of the clinical importance of autophagy-related genes (ARGs) regulating the immune microenvironment in patients with asthma remains lacking. METHODS: Clustering based on the k-means unsupervised clustering method was performed to identify autophagy-related subtypes in asthma. ARG-related diagnostic markers in low-autophagy subtypes were screened, the infiltration of immune cells in the airway epithelium was evaluated by the CIBERSORT, and the correlation between diagnostic markers and infiltrating immune cells was analyzed. On the basis of the expression of ARGs and combined with asthma control, a risk prediction model was established and verified by experiments. RESULTS: A total of 66 differentially expressed ARGs and 2 subtypes were identified between mild to moderate and severe asthma. Significant differences were observed in asthma control and FEV1 reversibility between the two subtypes, and the low-autophagy subtype was closely associated with severe asthma, energy metabolism, and hormone metabolism. The autophagy gene SERPINB10 was identified as a diagnostic marker and was related to the infiltration of immune cells, such as activated mast cells and neutrophils. Combined with asthma control, a risk prediction model was constructed, the expression of five risk genes was supported by animal experiments, was established for ARGs related to the prediction model. CONCLUSION: Autophagy plays a crucial role in the diversity and complexity of the asthma immune microenvironment and has clinical value in treatment response and prognosis. |
format | Online Article Text |
id | pubmed-9127139 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-91271392022-05-25 Autophagy-Related Genes Are Involved in the Progression and Prognosis of Asthma and Regulate the Immune Microenvironment Yang, Fan Kong, Jingwei Zong, Yuhan Li, Zhuqing Lyu, Mingsheng Li, Wanyang Li, Wenle Zhu, Haoyue Chen, Shunqi Zhao, Xiaoshan Wang, Ji Front Immunol Immunology BACKGROUND: Autophagy has been proven to play an important role in the pathogenesis of asthma and the regulation of the airway epithelial immune microenvironment. However, a systematic analysis of the clinical importance of autophagy-related genes (ARGs) regulating the immune microenvironment in patients with asthma remains lacking. METHODS: Clustering based on the k-means unsupervised clustering method was performed to identify autophagy-related subtypes in asthma. ARG-related diagnostic markers in low-autophagy subtypes were screened, the infiltration of immune cells in the airway epithelium was evaluated by the CIBERSORT, and the correlation between diagnostic markers and infiltrating immune cells was analyzed. On the basis of the expression of ARGs and combined with asthma control, a risk prediction model was established and verified by experiments. RESULTS: A total of 66 differentially expressed ARGs and 2 subtypes were identified between mild to moderate and severe asthma. Significant differences were observed in asthma control and FEV1 reversibility between the two subtypes, and the low-autophagy subtype was closely associated with severe asthma, energy metabolism, and hormone metabolism. The autophagy gene SERPINB10 was identified as a diagnostic marker and was related to the infiltration of immune cells, such as activated mast cells and neutrophils. Combined with asthma control, a risk prediction model was constructed, the expression of five risk genes was supported by animal experiments, was established for ARGs related to the prediction model. CONCLUSION: Autophagy plays a crucial role in the diversity and complexity of the asthma immune microenvironment and has clinical value in treatment response and prognosis. Frontiers Media S.A. 2022-05-10 /pmc/articles/PMC9127139/ /pubmed/35619697 http://dx.doi.org/10.3389/fimmu.2022.897835 Text en Copyright © 2022 Yang, Kong, Zong, Li, Lyu, Li, Li, Zhu, Chen, Zhao and Wang https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Immunology Yang, Fan Kong, Jingwei Zong, Yuhan Li, Zhuqing Lyu, Mingsheng Li, Wanyang Li, Wenle Zhu, Haoyue Chen, Shunqi Zhao, Xiaoshan Wang, Ji Autophagy-Related Genes Are Involved in the Progression and Prognosis of Asthma and Regulate the Immune Microenvironment |
title | Autophagy-Related Genes Are Involved in the Progression and Prognosis of Asthma and Regulate the Immune Microenvironment |
title_full | Autophagy-Related Genes Are Involved in the Progression and Prognosis of Asthma and Regulate the Immune Microenvironment |
title_fullStr | Autophagy-Related Genes Are Involved in the Progression and Prognosis of Asthma and Regulate the Immune Microenvironment |
title_full_unstemmed | Autophagy-Related Genes Are Involved in the Progression and Prognosis of Asthma and Regulate the Immune Microenvironment |
title_short | Autophagy-Related Genes Are Involved in the Progression and Prognosis of Asthma and Regulate the Immune Microenvironment |
title_sort | autophagy-related genes are involved in the progression and prognosis of asthma and regulate the immune microenvironment |
topic | Immunology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9127139/ https://www.ncbi.nlm.nih.gov/pubmed/35619697 http://dx.doi.org/10.3389/fimmu.2022.897835 |
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