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Unpaired Cross-Modality Educed Distillation (CMEDL) for Medical Image Segmentation

Accurate and robust segmentation of lung cancers from CT, even those located close to mediastinum, is needed to more accurately plan and deliver radiotherapy and to measure treatment response. Therefore, we developed a new cross-modality educed distillation (CMEDL) approach, using unpaired CT and MR...

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Autores principales: Jiang, Jue, Rimner, Andreas, Deasy, Joseph O., Veeraraghavan, Harini
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9128665/
https://www.ncbi.nlm.nih.gov/pubmed/34855590
http://dx.doi.org/10.1109/TMI.2021.3132291
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author Jiang, Jue
Rimner, Andreas
Deasy, Joseph O.
Veeraraghavan, Harini
author_facet Jiang, Jue
Rimner, Andreas
Deasy, Joseph O.
Veeraraghavan, Harini
author_sort Jiang, Jue
collection PubMed
description Accurate and robust segmentation of lung cancers from CT, even those located close to mediastinum, is needed to more accurately plan and deliver radiotherapy and to measure treatment response. Therefore, we developed a new cross-modality educed distillation (CMEDL) approach, using unpaired CT and MRI scans, whereby an informative teacher MRI network guides a student CT network to extract features that signal the difference between foreground and background. Our contribution eliminates two requirements of distillation methods: (i) paired image sets by using an image to image (I2I) translation and (ii) pre-training of the teacher network with a large training set by using concurrent training of all networks. Our framework uses an end-to-end trained unpaired I2I translation, teacher, and student segmentation networks. Architectural flexibility of our framework is demonstrated using 3 segmentation and 2 I2I networks. Networks were trained with 377 CT and 82 T2w MRI from different sets of patients, with independent validation (N = 209 tumors) and testing (N = 609 tumors) datasets. Network design, methods to combine MRI with CT information, distillation learning under informative (MRI to CT), weak (CT to MRI) and equal teacher (MRI to MRI), and ablation tests were performed. Accuracy was measured using Dice similarity (DSC), surface Dice (sDSC), and Hausdorff distance at the 95(th) percentile (HD95). The CMEDL approach was significantly (p < 0.001) more accurate (DSC of 0.77 vs. 0.73) than non-CMEDL methods with an informative teacher for CT lung tumor, with a weak teacher (DSC of 0.84 vs. 0.81) for MRI lung tumor, and with equal teacher (DSC of 0.90 vs. 0.88) for MRI multi-organ segmentation. CMEDL also reduced inter-rater lung tumor segmentation variabilities.
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spelling pubmed-91286652022-05-24 Unpaired Cross-Modality Educed Distillation (CMEDL) for Medical Image Segmentation Jiang, Jue Rimner, Andreas Deasy, Joseph O. Veeraraghavan, Harini IEEE Trans Med Imaging Article Accurate and robust segmentation of lung cancers from CT, even those located close to mediastinum, is needed to more accurately plan and deliver radiotherapy and to measure treatment response. Therefore, we developed a new cross-modality educed distillation (CMEDL) approach, using unpaired CT and MRI scans, whereby an informative teacher MRI network guides a student CT network to extract features that signal the difference between foreground and background. Our contribution eliminates two requirements of distillation methods: (i) paired image sets by using an image to image (I2I) translation and (ii) pre-training of the teacher network with a large training set by using concurrent training of all networks. Our framework uses an end-to-end trained unpaired I2I translation, teacher, and student segmentation networks. Architectural flexibility of our framework is demonstrated using 3 segmentation and 2 I2I networks. Networks were trained with 377 CT and 82 T2w MRI from different sets of patients, with independent validation (N = 209 tumors) and testing (N = 609 tumors) datasets. Network design, methods to combine MRI with CT information, distillation learning under informative (MRI to CT), weak (CT to MRI) and equal teacher (MRI to MRI), and ablation tests were performed. Accuracy was measured using Dice similarity (DSC), surface Dice (sDSC), and Hausdorff distance at the 95(th) percentile (HD95). The CMEDL approach was significantly (p < 0.001) more accurate (DSC of 0.77 vs. 0.73) than non-CMEDL methods with an informative teacher for CT lung tumor, with a weak teacher (DSC of 0.84 vs. 0.81) for MRI lung tumor, and with equal teacher (DSC of 0.90 vs. 0.88) for MRI multi-organ segmentation. CMEDL also reduced inter-rater lung tumor segmentation variabilities. 2022-05 2022-05-02 /pmc/articles/PMC9128665/ /pubmed/34855590 http://dx.doi.org/10.1109/TMI.2021.3132291 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License. For more information, see https://creativecommons.org/licenses/by-nc-nd/4.0/
spellingShingle Article
Jiang, Jue
Rimner, Andreas
Deasy, Joseph O.
Veeraraghavan, Harini
Unpaired Cross-Modality Educed Distillation (CMEDL) for Medical Image Segmentation
title Unpaired Cross-Modality Educed Distillation (CMEDL) for Medical Image Segmentation
title_full Unpaired Cross-Modality Educed Distillation (CMEDL) for Medical Image Segmentation
title_fullStr Unpaired Cross-Modality Educed Distillation (CMEDL) for Medical Image Segmentation
title_full_unstemmed Unpaired Cross-Modality Educed Distillation (CMEDL) for Medical Image Segmentation
title_short Unpaired Cross-Modality Educed Distillation (CMEDL) for Medical Image Segmentation
title_sort unpaired cross-modality educed distillation (cmedl) for medical image segmentation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9128665/
https://www.ncbi.nlm.nih.gov/pubmed/34855590
http://dx.doi.org/10.1109/TMI.2021.3132291
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AT veeraraghavanharini unpairedcrossmodalityeduceddistillationcmedlformedicalimagesegmentation