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Necroptosis-associated classification combined with tumor microenvironment characteristic analysis of cutaneous melanoma
Necroptosis is a mode of programmed cell death that overcomes apoptotic resistance. The accurate prognosis of cutaneous melanoma is complicated to predict due to tumor heterogeneity. Necroptosis contributes to the regulation of oncogenesis and cancer immunity. We comprehensively investigated differe...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9130269/ https://www.ncbi.nlm.nih.gov/pubmed/35610275 http://dx.doi.org/10.1038/s41598-022-12676-6 |
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author | Hu, Gang Jiang, Yan Ma, Jianying Zhan, Hui |
author_facet | Hu, Gang Jiang, Yan Ma, Jianying Zhan, Hui |
author_sort | Hu, Gang |
collection | PubMed |
description | Necroptosis is a mode of programmed cell death that overcomes apoptotic resistance. The accurate prognosis of cutaneous melanoma is complicated to predict due to tumor heterogeneity. Necroptosis contributes to the regulation of oncogenesis and cancer immunity. We comprehensively investigated different necroptosis patterns by the non-negative matrix factorization (NMF) clustering analysis and explored the relationships among necroptosis patterns, infiltered immune cells, and tumor microenvironment (TME) scores. Two different necroptosis patterns were identified, and the two clusters could predict prognosis and immune landscape. A four-gene signature was successfully constructed and validated its predictive capability of overall survival (OS) in cutaneous melanoma patients. The prognostic value of the signature was further enhanced by incorporating other independent prognostic factors such as age and clinicopathological stages in a nomogram-based prediction model. Patients with lower risk scores tended to have better OS, higher TME score, immune checkpoints, immunophenoscore (IPS), and lower Tumor Immune Dysfunction and Exclusion (TIDE), which indicated better responses to immunotherapy. In addition, the pigmentation score of the high-risk group was visibly higher than those of the low-risk group. In conclusion, the necroptosis-related signature indicated favorable predictive performance in cutaneous melanoma patients, which provides guidance for immunotherapy and provide novel insights into precision medicine. |
format | Online Article Text |
id | pubmed-9130269 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-91302692022-05-26 Necroptosis-associated classification combined with tumor microenvironment characteristic analysis of cutaneous melanoma Hu, Gang Jiang, Yan Ma, Jianying Zhan, Hui Sci Rep Article Necroptosis is a mode of programmed cell death that overcomes apoptotic resistance. The accurate prognosis of cutaneous melanoma is complicated to predict due to tumor heterogeneity. Necroptosis contributes to the regulation of oncogenesis and cancer immunity. We comprehensively investigated different necroptosis patterns by the non-negative matrix factorization (NMF) clustering analysis and explored the relationships among necroptosis patterns, infiltered immune cells, and tumor microenvironment (TME) scores. Two different necroptosis patterns were identified, and the two clusters could predict prognosis and immune landscape. A four-gene signature was successfully constructed and validated its predictive capability of overall survival (OS) in cutaneous melanoma patients. The prognostic value of the signature was further enhanced by incorporating other independent prognostic factors such as age and clinicopathological stages in a nomogram-based prediction model. Patients with lower risk scores tended to have better OS, higher TME score, immune checkpoints, immunophenoscore (IPS), and lower Tumor Immune Dysfunction and Exclusion (TIDE), which indicated better responses to immunotherapy. In addition, the pigmentation score of the high-risk group was visibly higher than those of the low-risk group. In conclusion, the necroptosis-related signature indicated favorable predictive performance in cutaneous melanoma patients, which provides guidance for immunotherapy and provide novel insights into precision medicine. Nature Publishing Group UK 2022-05-24 /pmc/articles/PMC9130269/ /pubmed/35610275 http://dx.doi.org/10.1038/s41598-022-12676-6 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Hu, Gang Jiang, Yan Ma, Jianying Zhan, Hui Necroptosis-associated classification combined with tumor microenvironment characteristic analysis of cutaneous melanoma |
title | Necroptosis-associated classification combined with tumor microenvironment characteristic analysis of cutaneous melanoma |
title_full | Necroptosis-associated classification combined with tumor microenvironment characteristic analysis of cutaneous melanoma |
title_fullStr | Necroptosis-associated classification combined with tumor microenvironment characteristic analysis of cutaneous melanoma |
title_full_unstemmed | Necroptosis-associated classification combined with tumor microenvironment characteristic analysis of cutaneous melanoma |
title_short | Necroptosis-associated classification combined with tumor microenvironment characteristic analysis of cutaneous melanoma |
title_sort | necroptosis-associated classification combined with tumor microenvironment characteristic analysis of cutaneous melanoma |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9130269/ https://www.ncbi.nlm.nih.gov/pubmed/35610275 http://dx.doi.org/10.1038/s41598-022-12676-6 |
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