Cargando…

Upregulation of Ferroptosis-Related Fanconi Anemia Group D2 is a Poor Prognostic Factor and an Indicator of Tumor Immune Cell Infiltration in Lung Adenocarcinoma

Fanconi anemia (FA) group D2 (FANCD2) is a ferroptosis-related gene crucial for DNA damage repair and negative ferroptosis regulation. Our study aimed to evaluate its prognostic value as well as its association with ferroptosis and immune infiltration in lung adenocarcinoma (LUAD). Transcriptome seq...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhang, Jingtao, Wang, Dongli, Chen, Xiubao, Ji, Lingyun, Yu, Minmin, Guo, Minghao, Zhang, Dexin, Chen, Weida, Xu, Fei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9130730/
https://www.ncbi.nlm.nih.gov/pubmed/35646059
http://dx.doi.org/10.3389/fgene.2022.825685
_version_ 1784713034072064000
author Zhang, Jingtao
Wang, Dongli
Chen, Xiubao
Ji, Lingyun
Yu, Minmin
Guo, Minghao
Zhang, Dexin
Chen, Weida
Xu, Fei
author_facet Zhang, Jingtao
Wang, Dongli
Chen, Xiubao
Ji, Lingyun
Yu, Minmin
Guo, Minghao
Zhang, Dexin
Chen, Weida
Xu, Fei
author_sort Zhang, Jingtao
collection PubMed
description Fanconi anemia (FA) group D2 (FANCD2) is a ferroptosis-related gene crucial for DNA damage repair and negative ferroptosis regulation. Our study aimed to evaluate its prognostic value as well as its association with ferroptosis and immune infiltration in lung adenocarcinoma (LUAD). Transcriptome sequencing data, clinical information, and immunohistochemistry data were collected from the TCGA, GEO, and HPA databases, respectively, for three independent cohorts. Univariate and multivariate analyses were used to assess the correlations between FANCD2 expression and overall survival or clinicopathological parameters. cBioPortal was utilized to investigate the FANCD2 alteration status. Gene and protein networks based on FANCD2 interactions were generated using GeneMANIA and STRING, respectively. Based on the CancerSEA database, the function of FANCD2 was explored at the single-cell level. The relationships between FANCD2 expression levels and tumor-infiltrating immune cells and their equivalent gene signatures were analyzed using TIMER, GEPIA, TISIDB, and ssGSEA databases. CIBERSORT was used to analyze the relevance of the infiltration of 24 types of immune cells. The results revealed that FANCD2 expression was significantly upregulated in LUAD and lung squamous cell carcinoma (LUSC) tissues than that in normal tissues. Further, the overexpression of FANCD2 was closely associated with poor survival for Patients with LUAD but not for patients with LUSC. FANCD2 expression levels were related to tumor-infiltrating immune cells and their matching gene signatures, including CD8(+) T cells, natural killer (NK) cells, dendritic cells (DC), and Th2 cells in cases of LUAD. Therefore, FANCD2 was identified as a crucial molecule underlying the synergistic effects of ferroptosis and immunotherapy for Patients with LUAD.
format Online
Article
Text
id pubmed-9130730
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-91307302022-05-26 Upregulation of Ferroptosis-Related Fanconi Anemia Group D2 is a Poor Prognostic Factor and an Indicator of Tumor Immune Cell Infiltration in Lung Adenocarcinoma Zhang, Jingtao Wang, Dongli Chen, Xiubao Ji, Lingyun Yu, Minmin Guo, Minghao Zhang, Dexin Chen, Weida Xu, Fei Front Genet Genetics Fanconi anemia (FA) group D2 (FANCD2) is a ferroptosis-related gene crucial for DNA damage repair and negative ferroptosis regulation. Our study aimed to evaluate its prognostic value as well as its association with ferroptosis and immune infiltration in lung adenocarcinoma (LUAD). Transcriptome sequencing data, clinical information, and immunohistochemistry data were collected from the TCGA, GEO, and HPA databases, respectively, for three independent cohorts. Univariate and multivariate analyses were used to assess the correlations between FANCD2 expression and overall survival or clinicopathological parameters. cBioPortal was utilized to investigate the FANCD2 alteration status. Gene and protein networks based on FANCD2 interactions were generated using GeneMANIA and STRING, respectively. Based on the CancerSEA database, the function of FANCD2 was explored at the single-cell level. The relationships between FANCD2 expression levels and tumor-infiltrating immune cells and their equivalent gene signatures were analyzed using TIMER, GEPIA, TISIDB, and ssGSEA databases. CIBERSORT was used to analyze the relevance of the infiltration of 24 types of immune cells. The results revealed that FANCD2 expression was significantly upregulated in LUAD and lung squamous cell carcinoma (LUSC) tissues than that in normal tissues. Further, the overexpression of FANCD2 was closely associated with poor survival for Patients with LUAD but not for patients with LUSC. FANCD2 expression levels were related to tumor-infiltrating immune cells and their matching gene signatures, including CD8(+) T cells, natural killer (NK) cells, dendritic cells (DC), and Th2 cells in cases of LUAD. Therefore, FANCD2 was identified as a crucial molecule underlying the synergistic effects of ferroptosis and immunotherapy for Patients with LUAD. Frontiers Media S.A. 2022-05-11 /pmc/articles/PMC9130730/ /pubmed/35646059 http://dx.doi.org/10.3389/fgene.2022.825685 Text en Copyright © 2022 Zhang, Wang, Chen, Ji, Yu, Guo, Zhang, Chen and Xu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Zhang, Jingtao
Wang, Dongli
Chen, Xiubao
Ji, Lingyun
Yu, Minmin
Guo, Minghao
Zhang, Dexin
Chen, Weida
Xu, Fei
Upregulation of Ferroptosis-Related Fanconi Anemia Group D2 is a Poor Prognostic Factor and an Indicator of Tumor Immune Cell Infiltration in Lung Adenocarcinoma
title Upregulation of Ferroptosis-Related Fanconi Anemia Group D2 is a Poor Prognostic Factor and an Indicator of Tumor Immune Cell Infiltration in Lung Adenocarcinoma
title_full Upregulation of Ferroptosis-Related Fanconi Anemia Group D2 is a Poor Prognostic Factor and an Indicator of Tumor Immune Cell Infiltration in Lung Adenocarcinoma
title_fullStr Upregulation of Ferroptosis-Related Fanconi Anemia Group D2 is a Poor Prognostic Factor and an Indicator of Tumor Immune Cell Infiltration in Lung Adenocarcinoma
title_full_unstemmed Upregulation of Ferroptosis-Related Fanconi Anemia Group D2 is a Poor Prognostic Factor and an Indicator of Tumor Immune Cell Infiltration in Lung Adenocarcinoma
title_short Upregulation of Ferroptosis-Related Fanconi Anemia Group D2 is a Poor Prognostic Factor and an Indicator of Tumor Immune Cell Infiltration in Lung Adenocarcinoma
title_sort upregulation of ferroptosis-related fanconi anemia group d2 is a poor prognostic factor and an indicator of tumor immune cell infiltration in lung adenocarcinoma
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9130730/
https://www.ncbi.nlm.nih.gov/pubmed/35646059
http://dx.doi.org/10.3389/fgene.2022.825685
work_keys_str_mv AT zhangjingtao upregulationofferroptosisrelatedfanconianemiagroupd2isapoorprognosticfactorandanindicatoroftumorimmunecellinfiltrationinlungadenocarcinoma
AT wangdongli upregulationofferroptosisrelatedfanconianemiagroupd2isapoorprognosticfactorandanindicatoroftumorimmunecellinfiltrationinlungadenocarcinoma
AT chenxiubao upregulationofferroptosisrelatedfanconianemiagroupd2isapoorprognosticfactorandanindicatoroftumorimmunecellinfiltrationinlungadenocarcinoma
AT jilingyun upregulationofferroptosisrelatedfanconianemiagroupd2isapoorprognosticfactorandanindicatoroftumorimmunecellinfiltrationinlungadenocarcinoma
AT yuminmin upregulationofferroptosisrelatedfanconianemiagroupd2isapoorprognosticfactorandanindicatoroftumorimmunecellinfiltrationinlungadenocarcinoma
AT guominghao upregulationofferroptosisrelatedfanconianemiagroupd2isapoorprognosticfactorandanindicatoroftumorimmunecellinfiltrationinlungadenocarcinoma
AT zhangdexin upregulationofferroptosisrelatedfanconianemiagroupd2isapoorprognosticfactorandanindicatoroftumorimmunecellinfiltrationinlungadenocarcinoma
AT chenweida upregulationofferroptosisrelatedfanconianemiagroupd2isapoorprognosticfactorandanindicatoroftumorimmunecellinfiltrationinlungadenocarcinoma
AT xufei upregulationofferroptosisrelatedfanconianemiagroupd2isapoorprognosticfactorandanindicatoroftumorimmunecellinfiltrationinlungadenocarcinoma