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Deciphering miR-520c-3p as a probable target for immunometabolism in non-small cell lung cancer using systems biology approach

Background: Non-small cell lung cancer (NSCLC) is considered to have more than 80% of all lung cancer cases, making it the leading cause of cancer-related deaths globally. MicroRNA (miRNA) deregulation has been seen often in NSCLC and has been linked to the disease’s genesis, progression, and metast...

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Autores principales: Gulhane, Pooja, Nimsarkar, Prajakta, Kharat, Komal, Singh, Shailza
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals LLC 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9131939/
https://www.ncbi.nlm.nih.gov/pubmed/35634241
http://dx.doi.org/10.18632/oncotarget.28233
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author Gulhane, Pooja
Nimsarkar, Prajakta
Kharat, Komal
Singh, Shailza
author_facet Gulhane, Pooja
Nimsarkar, Prajakta
Kharat, Komal
Singh, Shailza
author_sort Gulhane, Pooja
collection PubMed
description Background: Non-small cell lung cancer (NSCLC) is considered to have more than 80% of all lung cancer cases, making it the leading cause of cancer-related deaths globally. MicroRNA (miRNA) deregulation has been seen often in NSCLC and has been linked to the disease’s genesis, progression, and metastasis via affecting their target genes. Materials and Methods: Our study focused on the functionality of down-regulated miRNAs in NSCLC. For this study, we used 91 miRNAs reported to be down-regulated in NSCLC. The targets of these miRNAs were chosen from miRNA databases with functionality in NSCLC, including miRBase, miRDB, miRTV, and others. Inter-regulatory miRNA-NSCLC networks were generated. Simulated annealing was used to improve the network’s resilience and understandability. GSEA was used to examine 24607 genes reported experimentally in order to gain physiologically relevant information about the target miR-520c-3p. Results: The study revealed functional prominence on miR-520c-3p, down-regulated during NSCLC. The involvement of miR-520c-3p in the PI3K/AKT/mTOR signaling pathway was recognized. Conclusions: The therapeutic usage by designing a synthetic circuit of miR-520c-3p was explored, which may help in suppressing tumors in NSCLC. Our study holds promise for the successful deployment of currently proposed miRNA-based therapies for malignant disorders, which are still in the early pre-clinical stages of development.
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spelling pubmed-91319392022-05-27 Deciphering miR-520c-3p as a probable target for immunometabolism in non-small cell lung cancer using systems biology approach Gulhane, Pooja Nimsarkar, Prajakta Kharat, Komal Singh, Shailza Oncotarget Research Paper Background: Non-small cell lung cancer (NSCLC) is considered to have more than 80% of all lung cancer cases, making it the leading cause of cancer-related deaths globally. MicroRNA (miRNA) deregulation has been seen often in NSCLC and has been linked to the disease’s genesis, progression, and metastasis via affecting their target genes. Materials and Methods: Our study focused on the functionality of down-regulated miRNAs in NSCLC. For this study, we used 91 miRNAs reported to be down-regulated in NSCLC. The targets of these miRNAs were chosen from miRNA databases with functionality in NSCLC, including miRBase, miRDB, miRTV, and others. Inter-regulatory miRNA-NSCLC networks were generated. Simulated annealing was used to improve the network’s resilience and understandability. GSEA was used to examine 24607 genes reported experimentally in order to gain physiologically relevant information about the target miR-520c-3p. Results: The study revealed functional prominence on miR-520c-3p, down-regulated during NSCLC. The involvement of miR-520c-3p in the PI3K/AKT/mTOR signaling pathway was recognized. Conclusions: The therapeutic usage by designing a synthetic circuit of miR-520c-3p was explored, which may help in suppressing tumors in NSCLC. Our study holds promise for the successful deployment of currently proposed miRNA-based therapies for malignant disorders, which are still in the early pre-clinical stages of development. Impact Journals LLC 2022-05-24 /pmc/articles/PMC9131939/ /pubmed/35634241 http://dx.doi.org/10.18632/oncotarget.28233 Text en Copyright: © 2022 Gulhane et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Gulhane, Pooja
Nimsarkar, Prajakta
Kharat, Komal
Singh, Shailza
Deciphering miR-520c-3p as a probable target for immunometabolism in non-small cell lung cancer using systems biology approach
title Deciphering miR-520c-3p as a probable target for immunometabolism in non-small cell lung cancer using systems biology approach
title_full Deciphering miR-520c-3p as a probable target for immunometabolism in non-small cell lung cancer using systems biology approach
title_fullStr Deciphering miR-520c-3p as a probable target for immunometabolism in non-small cell lung cancer using systems biology approach
title_full_unstemmed Deciphering miR-520c-3p as a probable target for immunometabolism in non-small cell lung cancer using systems biology approach
title_short Deciphering miR-520c-3p as a probable target for immunometabolism in non-small cell lung cancer using systems biology approach
title_sort deciphering mir-520c-3p as a probable target for immunometabolism in non-small cell lung cancer using systems biology approach
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9131939/
https://www.ncbi.nlm.nih.gov/pubmed/35634241
http://dx.doi.org/10.18632/oncotarget.28233
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