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Identification of an Inflammatory Response-Related Gene Signature to Predict Survival and Immune Status in Glioma Patients

BACKGROUND: Glioma is the most common primary brain tumor with high mortality and poor outcomes. As a hallmark of cancers, inflammatory responses are crucial for their progression. The present study is aimed at exploring the prognostic value of inflammatory response-related genes (IRRGs) and constru...

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Autores principales: Yan, Zhaoyue, Gao, Yushuai, Yu, Jinliang, Shen, Zhiyuan, Bu, Xingyao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9132661/
https://www.ncbi.nlm.nih.gov/pubmed/35647198
http://dx.doi.org/10.1155/2022/8972730
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author Yan, Zhaoyue
Gao, Yushuai
Yu, Jinliang
Shen, Zhiyuan
Bu, Xingyao
author_facet Yan, Zhaoyue
Gao, Yushuai
Yu, Jinliang
Shen, Zhiyuan
Bu, Xingyao
author_sort Yan, Zhaoyue
collection PubMed
description BACKGROUND: Glioma is the most common primary brain tumor with high mortality and poor outcomes. As a hallmark of cancers, inflammatory responses are crucial for their progression. The present study is aimed at exploring the prognostic value of inflammatory response-related genes (IRRGs) and constructing a prognostic IRRG signature for gliomas. MATERIALS AND METHODS: We investigated the relationship between IRRGs and gliomas by integrating the transcriptomic data for gliomas from public databases. Differentially expressed IRRGs (DE-IRRGs) were identified in the GSE4290 cohort. Further, univariate, least absolute shrinkage and selection operator, and multivariate Cox regression analyses were conducted to construct an IRRG signature using The Cancer Genome Atlas (TCGA) cohort. Gliomas from the Chinese Glioma Genome Atlas (CGGA) cohort were employed for independent validation. The performance of gene signature was assessed by survival and receiver operating characteristic curve analyses. The differences in clinical correlations, immune infiltrate types, immunotherapeutic response predictions, and pathway enrichment among subgroups were investigated via bioinformatic algorithms. RESULTS: In total, 37 DE-IRRGs were determined, of which 31 were found to be associated with survival. Ultimately, eight genes were retained to construct an IRRG signature that further classified glioma patients into two groups; the high-risk group suffered a poorer outcome as compared to the low-risk group. Furthermore, the high-risk group was significantly correlated with several risk factors, including older age, higher tumor grade, IDH wild type, 1p19q noncodel, and MGMT unmethylation. The nomogram was constructed by integrating the risk scores and other independent clinical characteristics. Moreover, the high-risk group had a greater immune infiltration and was most likely to benefit from immunotherapy. Gene set enrichment analysis suggested that immune and oncogenic pathways were enriched in high-risk glioma patients. CONCLUSION: We constructed a signature composed of eight IRRGs for gliomas, which could effectively predict survival and guide decision-making for treatment.
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spelling pubmed-91326612022-05-26 Identification of an Inflammatory Response-Related Gene Signature to Predict Survival and Immune Status in Glioma Patients Yan, Zhaoyue Gao, Yushuai Yu, Jinliang Shen, Zhiyuan Bu, Xingyao J Immunol Res Research Article BACKGROUND: Glioma is the most common primary brain tumor with high mortality and poor outcomes. As a hallmark of cancers, inflammatory responses are crucial for their progression. The present study is aimed at exploring the prognostic value of inflammatory response-related genes (IRRGs) and constructing a prognostic IRRG signature for gliomas. MATERIALS AND METHODS: We investigated the relationship between IRRGs and gliomas by integrating the transcriptomic data for gliomas from public databases. Differentially expressed IRRGs (DE-IRRGs) were identified in the GSE4290 cohort. Further, univariate, least absolute shrinkage and selection operator, and multivariate Cox regression analyses were conducted to construct an IRRG signature using The Cancer Genome Atlas (TCGA) cohort. Gliomas from the Chinese Glioma Genome Atlas (CGGA) cohort were employed for independent validation. The performance of gene signature was assessed by survival and receiver operating characteristic curve analyses. The differences in clinical correlations, immune infiltrate types, immunotherapeutic response predictions, and pathway enrichment among subgroups were investigated via bioinformatic algorithms. RESULTS: In total, 37 DE-IRRGs were determined, of which 31 were found to be associated with survival. Ultimately, eight genes were retained to construct an IRRG signature that further classified glioma patients into two groups; the high-risk group suffered a poorer outcome as compared to the low-risk group. Furthermore, the high-risk group was significantly correlated with several risk factors, including older age, higher tumor grade, IDH wild type, 1p19q noncodel, and MGMT unmethylation. The nomogram was constructed by integrating the risk scores and other independent clinical characteristics. Moreover, the high-risk group had a greater immune infiltration and was most likely to benefit from immunotherapy. Gene set enrichment analysis suggested that immune and oncogenic pathways were enriched in high-risk glioma patients. CONCLUSION: We constructed a signature composed of eight IRRGs for gliomas, which could effectively predict survival and guide decision-making for treatment. Hindawi 2022-05-18 /pmc/articles/PMC9132661/ /pubmed/35647198 http://dx.doi.org/10.1155/2022/8972730 Text en Copyright © 2022 Zhaoyue Yan et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Yan, Zhaoyue
Gao, Yushuai
Yu, Jinliang
Shen, Zhiyuan
Bu, Xingyao
Identification of an Inflammatory Response-Related Gene Signature to Predict Survival and Immune Status in Glioma Patients
title Identification of an Inflammatory Response-Related Gene Signature to Predict Survival and Immune Status in Glioma Patients
title_full Identification of an Inflammatory Response-Related Gene Signature to Predict Survival and Immune Status in Glioma Patients
title_fullStr Identification of an Inflammatory Response-Related Gene Signature to Predict Survival and Immune Status in Glioma Patients
title_full_unstemmed Identification of an Inflammatory Response-Related Gene Signature to Predict Survival and Immune Status in Glioma Patients
title_short Identification of an Inflammatory Response-Related Gene Signature to Predict Survival and Immune Status in Glioma Patients
title_sort identification of an inflammatory response-related gene signature to predict survival and immune status in glioma patients
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9132661/
https://www.ncbi.nlm.nih.gov/pubmed/35647198
http://dx.doi.org/10.1155/2022/8972730
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