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Development and Validation of an Explainable Machine Learning Model for Major Complications After Cytoreductive Surgery
IMPORTANCE: Cytoreductive surgery (CRS) is one of the most complex operations in surgical oncology with significant morbidity, and improved risk prediction tools are critically needed. Machine learning models can potentially overcome the limitations of traditional multiple logistic regression (MLR)...
Autores principales: | , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Medical Association
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9133947/ https://www.ncbi.nlm.nih.gov/pubmed/35612856 http://dx.doi.org/10.1001/jamanetworkopen.2022.12930 |
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author | Deng, Huiyu Eftekhari, Zahra Carlin, Cameron Veerapong, Jula Fournier, Keith F. Johnston, Fabian M. Dineen, Sean P. Powers, Benjamin D. Hendrix, Ryan Lambert, Laura A. Abbott, Daniel E. Vande Walle, Kara Grotz, Travis E. Patel, Sameer H. Clarke, Callisia N. Staley, Charles A. Abdel-Misih, Sherif Cloyd, Jordan M. Lee, Byrne Fong, Yuman Raoof, Mustafa |
author_facet | Deng, Huiyu Eftekhari, Zahra Carlin, Cameron Veerapong, Jula Fournier, Keith F. Johnston, Fabian M. Dineen, Sean P. Powers, Benjamin D. Hendrix, Ryan Lambert, Laura A. Abbott, Daniel E. Vande Walle, Kara Grotz, Travis E. Patel, Sameer H. Clarke, Callisia N. Staley, Charles A. Abdel-Misih, Sherif Cloyd, Jordan M. Lee, Byrne Fong, Yuman Raoof, Mustafa |
author_sort | Deng, Huiyu |
collection | PubMed |
description | IMPORTANCE: Cytoreductive surgery (CRS) is one of the most complex operations in surgical oncology with significant morbidity, and improved risk prediction tools are critically needed. Machine learning models can potentially overcome the limitations of traditional multiple logistic regression (MLR) models and provide accurate risk estimates. OBJECTIVE: To develop and validate an explainable machine learning model for predicting major postoperative complications in patients undergoing CRS. DESIGN, SETTING, AND PARTICIPANTS: This prognostic study used patient data from tertiary care hospitals with expertise in CRS included in the US Hyperthermic Intraperitoneal Chemotherapy Collaborative Database between 1998 and 2018. Information from 147 variables was extracted to predict the risk of a major complication. An ensemble-based machine learning (gradient-boosting) model was optimized on 80% of the sample with subsequent validation on a 20% holdout data set. The machine learning model was compared with traditional MLR models. The artificial intelligence SHAP (Shapley additive explanations) method was used for interpretation of patient- and cohort-level risk estimates and interactions to define novel surgical risk phenotypes. Data were analyzed between November 2019 and August 2021. EXPOSURES: Cytoreductive surgery. MAIN OUTCOMES AND MEASURES: Area under the receiver operating characteristics (AUROC); area under the precision recall curve (AUPRC). RESULTS: Data from a total 2372 patients were included in model development (mean age, 55 years [range, 11-95 years]; 1366 [57.6%] women). The optimized machine learning model achieved high discrimination (AUROC: mean cross-validation, 0.75 [range, 0.73-0.81]; test, 0.74) and precision (AUPRC: mean cross-validation, 0.50 [range, 0.46-0.58]; test, 0.42). Compared with the optimized machine learning model, the published MLR model performed worse (test AUROC and AUPRC: 0.54 and 0.18, respectively). Higher volume of estimated blood loss, having pelvic peritonectomy, and longer operative time were the top 3 contributors to the high likelihood of major complications. SHAP dependence plots demonstrated insightful nonlinear interactive associations between predictors and major complications. For instance, high estimated blood loss (ie, above 500 mL) was only detrimental when operative time exceeded 9 hours. Unsupervised clustering of patients based on similarity of sources of risk allowed identification of 6 distinct surgical risk phenotypes. CONCLUSIONS AND RELEVANCE: In this prognostic study using data from patients undergoing CRS, an optimized machine learning model demonstrated a superior ability to predict individual- and cohort-level risk of major complications vs traditional methods. Using the SHAP method, 6 distinct surgical phenotypes were identified based on sources of risk of major complications. |
format | Online Article Text |
id | pubmed-9133947 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Medical Association |
record_format | MEDLINE/PubMed |
spelling | pubmed-91339472022-06-09 Development and Validation of an Explainable Machine Learning Model for Major Complications After Cytoreductive Surgery Deng, Huiyu Eftekhari, Zahra Carlin, Cameron Veerapong, Jula Fournier, Keith F. Johnston, Fabian M. Dineen, Sean P. Powers, Benjamin D. Hendrix, Ryan Lambert, Laura A. Abbott, Daniel E. Vande Walle, Kara Grotz, Travis E. Patel, Sameer H. Clarke, Callisia N. Staley, Charles A. Abdel-Misih, Sherif Cloyd, Jordan M. Lee, Byrne Fong, Yuman Raoof, Mustafa JAMA Netw Open Original Investigation IMPORTANCE: Cytoreductive surgery (CRS) is one of the most complex operations in surgical oncology with significant morbidity, and improved risk prediction tools are critically needed. Machine learning models can potentially overcome the limitations of traditional multiple logistic regression (MLR) models and provide accurate risk estimates. OBJECTIVE: To develop and validate an explainable machine learning model for predicting major postoperative complications in patients undergoing CRS. DESIGN, SETTING, AND PARTICIPANTS: This prognostic study used patient data from tertiary care hospitals with expertise in CRS included in the US Hyperthermic Intraperitoneal Chemotherapy Collaborative Database between 1998 and 2018. Information from 147 variables was extracted to predict the risk of a major complication. An ensemble-based machine learning (gradient-boosting) model was optimized on 80% of the sample with subsequent validation on a 20% holdout data set. The machine learning model was compared with traditional MLR models. The artificial intelligence SHAP (Shapley additive explanations) method was used for interpretation of patient- and cohort-level risk estimates and interactions to define novel surgical risk phenotypes. Data were analyzed between November 2019 and August 2021. EXPOSURES: Cytoreductive surgery. MAIN OUTCOMES AND MEASURES: Area under the receiver operating characteristics (AUROC); area under the precision recall curve (AUPRC). RESULTS: Data from a total 2372 patients were included in model development (mean age, 55 years [range, 11-95 years]; 1366 [57.6%] women). The optimized machine learning model achieved high discrimination (AUROC: mean cross-validation, 0.75 [range, 0.73-0.81]; test, 0.74) and precision (AUPRC: mean cross-validation, 0.50 [range, 0.46-0.58]; test, 0.42). Compared with the optimized machine learning model, the published MLR model performed worse (test AUROC and AUPRC: 0.54 and 0.18, respectively). Higher volume of estimated blood loss, having pelvic peritonectomy, and longer operative time were the top 3 contributors to the high likelihood of major complications. SHAP dependence plots demonstrated insightful nonlinear interactive associations between predictors and major complications. For instance, high estimated blood loss (ie, above 500 mL) was only detrimental when operative time exceeded 9 hours. Unsupervised clustering of patients based on similarity of sources of risk allowed identification of 6 distinct surgical risk phenotypes. CONCLUSIONS AND RELEVANCE: In this prognostic study using data from patients undergoing CRS, an optimized machine learning model demonstrated a superior ability to predict individual- and cohort-level risk of major complications vs traditional methods. Using the SHAP method, 6 distinct surgical phenotypes were identified based on sources of risk of major complications. American Medical Association 2022-05-25 /pmc/articles/PMC9133947/ /pubmed/35612856 http://dx.doi.org/10.1001/jamanetworkopen.2022.12930 Text en Copyright 2022 Deng H et al. JAMA Network Open. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the CC-BY License. |
spellingShingle | Original Investigation Deng, Huiyu Eftekhari, Zahra Carlin, Cameron Veerapong, Jula Fournier, Keith F. Johnston, Fabian M. Dineen, Sean P. Powers, Benjamin D. Hendrix, Ryan Lambert, Laura A. Abbott, Daniel E. Vande Walle, Kara Grotz, Travis E. Patel, Sameer H. Clarke, Callisia N. Staley, Charles A. Abdel-Misih, Sherif Cloyd, Jordan M. Lee, Byrne Fong, Yuman Raoof, Mustafa Development and Validation of an Explainable Machine Learning Model for Major Complications After Cytoreductive Surgery |
title | Development and Validation of an Explainable Machine Learning Model for Major Complications After Cytoreductive Surgery |
title_full | Development and Validation of an Explainable Machine Learning Model for Major Complications After Cytoreductive Surgery |
title_fullStr | Development and Validation of an Explainable Machine Learning Model for Major Complications After Cytoreductive Surgery |
title_full_unstemmed | Development and Validation of an Explainable Machine Learning Model for Major Complications After Cytoreductive Surgery |
title_short | Development and Validation of an Explainable Machine Learning Model for Major Complications After Cytoreductive Surgery |
title_sort | development and validation of an explainable machine learning model for major complications after cytoreductive surgery |
topic | Original Investigation |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9133947/ https://www.ncbi.nlm.nih.gov/pubmed/35612856 http://dx.doi.org/10.1001/jamanetworkopen.2022.12930 |
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