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Uncovering chains of infections through spatio-temporal and visual analysis of COVID-19 contact traces

A major challenge for departments of public health (DPHs) in dealing with the ongoing COVID-19 pandemic is tracing contacts in exponentially growing SARS-CoV-2 infection clusters. Prevention of further disease spread requires a comprehensive registration of the connections between individuals and cl...

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Autores principales: Antweiler, Dario, Sessler, David, Rossknecht, Maxim, Abb, Benjamin, Ginzel, Sebastian, Kohlhammer, Jörn
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Ltd. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9134768/
https://www.ncbi.nlm.nih.gov/pubmed/35637696
http://dx.doi.org/10.1016/j.cag.2022.05.013
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author Antweiler, Dario
Sessler, David
Rossknecht, Maxim
Abb, Benjamin
Ginzel, Sebastian
Kohlhammer, Jörn
author_facet Antweiler, Dario
Sessler, David
Rossknecht, Maxim
Abb, Benjamin
Ginzel, Sebastian
Kohlhammer, Jörn
author_sort Antweiler, Dario
collection PubMed
description A major challenge for departments of public health (DPHs) in dealing with the ongoing COVID-19 pandemic is tracing contacts in exponentially growing SARS-CoV-2 infection clusters. Prevention of further disease spread requires a comprehensive registration of the connections between individuals and clusters. Due to the high number of infections with unknown origin, the healthcare analysts need to identify connected cases and clusters through accumulated epidemiological knowledge and the metadata of the infections in their database. Here we contribute a visual analytics dashboard to identify, assess and visualize clusters in COVID-19 contact tracing networks. Additionally, we demonstrate how graph-based machine learning methods can be used to find missing links between infection clusters and thus support the mission to get a comprehensive view on infection events. This work was developed through close collaboration with DPHs in Germany. We argue how our dashboard supports the identification of clusters by public health experts, discuss ongoing developments and possible extensions.
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spelling pubmed-91347682022-05-26 Uncovering chains of infections through spatio-temporal and visual analysis of COVID-19 contact traces Antweiler, Dario Sessler, David Rossknecht, Maxim Abb, Benjamin Ginzel, Sebastian Kohlhammer, Jörn Comput Graph Special Section on EuroVA 2021 A major challenge for departments of public health (DPHs) in dealing with the ongoing COVID-19 pandemic is tracing contacts in exponentially growing SARS-CoV-2 infection clusters. Prevention of further disease spread requires a comprehensive registration of the connections between individuals and clusters. Due to the high number of infections with unknown origin, the healthcare analysts need to identify connected cases and clusters through accumulated epidemiological knowledge and the metadata of the infections in their database. Here we contribute a visual analytics dashboard to identify, assess and visualize clusters in COVID-19 contact tracing networks. Additionally, we demonstrate how graph-based machine learning methods can be used to find missing links between infection clusters and thus support the mission to get a comprehensive view on infection events. This work was developed through close collaboration with DPHs in Germany. We argue how our dashboard supports the identification of clusters by public health experts, discuss ongoing developments and possible extensions. Elsevier Ltd. 2022-08 2022-05-26 /pmc/articles/PMC9134768/ /pubmed/35637696 http://dx.doi.org/10.1016/j.cag.2022.05.013 Text en © 2022 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Special Section on EuroVA 2021
Antweiler, Dario
Sessler, David
Rossknecht, Maxim
Abb, Benjamin
Ginzel, Sebastian
Kohlhammer, Jörn
Uncovering chains of infections through spatio-temporal and visual analysis of COVID-19 contact traces
title Uncovering chains of infections through spatio-temporal and visual analysis of COVID-19 contact traces
title_full Uncovering chains of infections through spatio-temporal and visual analysis of COVID-19 contact traces
title_fullStr Uncovering chains of infections through spatio-temporal and visual analysis of COVID-19 contact traces
title_full_unstemmed Uncovering chains of infections through spatio-temporal and visual analysis of COVID-19 contact traces
title_short Uncovering chains of infections through spatio-temporal and visual analysis of COVID-19 contact traces
title_sort uncovering chains of infections through spatio-temporal and visual analysis of covid-19 contact traces
topic Special Section on EuroVA 2021
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9134768/
https://www.ncbi.nlm.nih.gov/pubmed/35637696
http://dx.doi.org/10.1016/j.cag.2022.05.013
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