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RecQ mediated genome instability 2 (RMI2): a potential prognostic and immunological biomarker for pan-cancers

Background: RecQ mediated genome instability 2 (RMI2) is an essential component of the BLM-TopoIIIa-RMI1-RMI2 (BTR) complex. However, the mysterious veil of the potential immunological relationship of RMI2 in tumorigenesis and development has not been revealed. Methods: We conducted the differential...

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Autores principales: Wei, Wei, Ying, Xiaomei, Chen, Liang, Sun, Qingmei, Lu, Xiaohuan, Xia, Yang, Xu, Rubin, Zhu, Zhechen, Zhang, Dong, Tang, Qikai, Li, Li, Xie, Jiaheng, Yu, Hongzhu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9134953/
https://www.ncbi.nlm.nih.gov/pubmed/35552266
http://dx.doi.org/10.18632/aging.204076
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author Wei, Wei
Ying, Xiaomei
Chen, Liang
Sun, Qingmei
Lu, Xiaohuan
Xia, Yang
Xu, Rubin
Zhu, Zhechen
Zhang, Dong
Tang, Qikai
Li, Li
Xie, Jiaheng
Yu, Hongzhu
author_facet Wei, Wei
Ying, Xiaomei
Chen, Liang
Sun, Qingmei
Lu, Xiaohuan
Xia, Yang
Xu, Rubin
Zhu, Zhechen
Zhang, Dong
Tang, Qikai
Li, Li
Xie, Jiaheng
Yu, Hongzhu
author_sort Wei, Wei
collection PubMed
description Background: RecQ mediated genome instability 2 (RMI2) is an essential component of the BLM-TopoIIIa-RMI1-RMI2 (BTR) complex. However, the mysterious veil of the potential immunological relationship of RMI2 in tumorigenesis and development has not been revealed. Methods: We conducted the differential expression (DE) analysis of the RMI2 in pan-cancer using data onto Oncomine, TIMER, and GEPIA databases. Afterward, survival analysis and clinical-stage correlation analysis were performed via the TCGA database. Subsequently, we used R software to further explore the relationship between the expression level of RMI2 and tumor mutation burden (TMB), microsatellite instability (MSI), tumor microenvironment (TME), tumor immune-infiltrated cells (TILs), immune checkpoints (ICP), mismatch repairs (MMRs) -related genes, m6A-related genes, DNA methylation-related genes. Finally, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) functional networks were also performed for annotation via gene set enrichment analysis (GSEA). Results: The RMI2 expressed remarkably high in most cancer types compared to cancer adjacent normal tissues (P < 0.05). High expression of RMI2 was linked to unfavorable prognosis and advanced stage of disease, especially in LIHC and PAAD. RMI2 expression was related to TMB in 16 cancer types and MSI in 8 cancer types. Furthermore, it is significant positive correlations between RMI2 and stromal and immune cells, ICP-related genes, MMRs-related genes, m6A-related genes, and DNA methylation-related genes. Finally, GSEA analysis revealed that RMI2 was engaged in a variety of signaling pathways in pan-cancers. Conclusions: RMI2 may serve as a potential biological target and probably assume a crucial part in tumorigenesis and progression.
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spelling pubmed-91349532022-06-01 RecQ mediated genome instability 2 (RMI2): a potential prognostic and immunological biomarker for pan-cancers Wei, Wei Ying, Xiaomei Chen, Liang Sun, Qingmei Lu, Xiaohuan Xia, Yang Xu, Rubin Zhu, Zhechen Zhang, Dong Tang, Qikai Li, Li Xie, Jiaheng Yu, Hongzhu Aging (Albany NY) Research Paper Background: RecQ mediated genome instability 2 (RMI2) is an essential component of the BLM-TopoIIIa-RMI1-RMI2 (BTR) complex. However, the mysterious veil of the potential immunological relationship of RMI2 in tumorigenesis and development has not been revealed. Methods: We conducted the differential expression (DE) analysis of the RMI2 in pan-cancer using data onto Oncomine, TIMER, and GEPIA databases. Afterward, survival analysis and clinical-stage correlation analysis were performed via the TCGA database. Subsequently, we used R software to further explore the relationship between the expression level of RMI2 and tumor mutation burden (TMB), microsatellite instability (MSI), tumor microenvironment (TME), tumor immune-infiltrated cells (TILs), immune checkpoints (ICP), mismatch repairs (MMRs) -related genes, m6A-related genes, DNA methylation-related genes. Finally, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) functional networks were also performed for annotation via gene set enrichment analysis (GSEA). Results: The RMI2 expressed remarkably high in most cancer types compared to cancer adjacent normal tissues (P < 0.05). High expression of RMI2 was linked to unfavorable prognosis and advanced stage of disease, especially in LIHC and PAAD. RMI2 expression was related to TMB in 16 cancer types and MSI in 8 cancer types. Furthermore, it is significant positive correlations between RMI2 and stromal and immune cells, ICP-related genes, MMRs-related genes, m6A-related genes, and DNA methylation-related genes. Finally, GSEA analysis revealed that RMI2 was engaged in a variety of signaling pathways in pan-cancers. Conclusions: RMI2 may serve as a potential biological target and probably assume a crucial part in tumorigenesis and progression. Impact Journals 2022-05-12 /pmc/articles/PMC9134953/ /pubmed/35552266 http://dx.doi.org/10.18632/aging.204076 Text en Copyright: © 2022 Wei et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Wei, Wei
Ying, Xiaomei
Chen, Liang
Sun, Qingmei
Lu, Xiaohuan
Xia, Yang
Xu, Rubin
Zhu, Zhechen
Zhang, Dong
Tang, Qikai
Li, Li
Xie, Jiaheng
Yu, Hongzhu
RecQ mediated genome instability 2 (RMI2): a potential prognostic and immunological biomarker for pan-cancers
title RecQ mediated genome instability 2 (RMI2): a potential prognostic and immunological biomarker for pan-cancers
title_full RecQ mediated genome instability 2 (RMI2): a potential prognostic and immunological biomarker for pan-cancers
title_fullStr RecQ mediated genome instability 2 (RMI2): a potential prognostic and immunological biomarker for pan-cancers
title_full_unstemmed RecQ mediated genome instability 2 (RMI2): a potential prognostic and immunological biomarker for pan-cancers
title_short RecQ mediated genome instability 2 (RMI2): a potential prognostic and immunological biomarker for pan-cancers
title_sort recq mediated genome instability 2 (rmi2): a potential prognostic and immunological biomarker for pan-cancers
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9134953/
https://www.ncbi.nlm.nih.gov/pubmed/35552266
http://dx.doi.org/10.18632/aging.204076
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