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RecQ mediated genome instability 2 (RMI2): a potential prognostic and immunological biomarker for pan-cancers
Background: RecQ mediated genome instability 2 (RMI2) is an essential component of the BLM-TopoIIIa-RMI1-RMI2 (BTR) complex. However, the mysterious veil of the potential immunological relationship of RMI2 in tumorigenesis and development has not been revealed. Methods: We conducted the differential...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9134953/ https://www.ncbi.nlm.nih.gov/pubmed/35552266 http://dx.doi.org/10.18632/aging.204076 |
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author | Wei, Wei Ying, Xiaomei Chen, Liang Sun, Qingmei Lu, Xiaohuan Xia, Yang Xu, Rubin Zhu, Zhechen Zhang, Dong Tang, Qikai Li, Li Xie, Jiaheng Yu, Hongzhu |
author_facet | Wei, Wei Ying, Xiaomei Chen, Liang Sun, Qingmei Lu, Xiaohuan Xia, Yang Xu, Rubin Zhu, Zhechen Zhang, Dong Tang, Qikai Li, Li Xie, Jiaheng Yu, Hongzhu |
author_sort | Wei, Wei |
collection | PubMed |
description | Background: RecQ mediated genome instability 2 (RMI2) is an essential component of the BLM-TopoIIIa-RMI1-RMI2 (BTR) complex. However, the mysterious veil of the potential immunological relationship of RMI2 in tumorigenesis and development has not been revealed. Methods: We conducted the differential expression (DE) analysis of the RMI2 in pan-cancer using data onto Oncomine, TIMER, and GEPIA databases. Afterward, survival analysis and clinical-stage correlation analysis were performed via the TCGA database. Subsequently, we used R software to further explore the relationship between the expression level of RMI2 and tumor mutation burden (TMB), microsatellite instability (MSI), tumor microenvironment (TME), tumor immune-infiltrated cells (TILs), immune checkpoints (ICP), mismatch repairs (MMRs) -related genes, m6A-related genes, DNA methylation-related genes. Finally, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) functional networks were also performed for annotation via gene set enrichment analysis (GSEA). Results: The RMI2 expressed remarkably high in most cancer types compared to cancer adjacent normal tissues (P < 0.05). High expression of RMI2 was linked to unfavorable prognosis and advanced stage of disease, especially in LIHC and PAAD. RMI2 expression was related to TMB in 16 cancer types and MSI in 8 cancer types. Furthermore, it is significant positive correlations between RMI2 and stromal and immune cells, ICP-related genes, MMRs-related genes, m6A-related genes, and DNA methylation-related genes. Finally, GSEA analysis revealed that RMI2 was engaged in a variety of signaling pathways in pan-cancers. Conclusions: RMI2 may serve as a potential biological target and probably assume a crucial part in tumorigenesis and progression. |
format | Online Article Text |
id | pubmed-9134953 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Impact Journals |
record_format | MEDLINE/PubMed |
spelling | pubmed-91349532022-06-01 RecQ mediated genome instability 2 (RMI2): a potential prognostic and immunological biomarker for pan-cancers Wei, Wei Ying, Xiaomei Chen, Liang Sun, Qingmei Lu, Xiaohuan Xia, Yang Xu, Rubin Zhu, Zhechen Zhang, Dong Tang, Qikai Li, Li Xie, Jiaheng Yu, Hongzhu Aging (Albany NY) Research Paper Background: RecQ mediated genome instability 2 (RMI2) is an essential component of the BLM-TopoIIIa-RMI1-RMI2 (BTR) complex. However, the mysterious veil of the potential immunological relationship of RMI2 in tumorigenesis and development has not been revealed. Methods: We conducted the differential expression (DE) analysis of the RMI2 in pan-cancer using data onto Oncomine, TIMER, and GEPIA databases. Afterward, survival analysis and clinical-stage correlation analysis were performed via the TCGA database. Subsequently, we used R software to further explore the relationship between the expression level of RMI2 and tumor mutation burden (TMB), microsatellite instability (MSI), tumor microenvironment (TME), tumor immune-infiltrated cells (TILs), immune checkpoints (ICP), mismatch repairs (MMRs) -related genes, m6A-related genes, DNA methylation-related genes. Finally, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) functional networks were also performed for annotation via gene set enrichment analysis (GSEA). Results: The RMI2 expressed remarkably high in most cancer types compared to cancer adjacent normal tissues (P < 0.05). High expression of RMI2 was linked to unfavorable prognosis and advanced stage of disease, especially in LIHC and PAAD. RMI2 expression was related to TMB in 16 cancer types and MSI in 8 cancer types. Furthermore, it is significant positive correlations between RMI2 and stromal and immune cells, ICP-related genes, MMRs-related genes, m6A-related genes, and DNA methylation-related genes. Finally, GSEA analysis revealed that RMI2 was engaged in a variety of signaling pathways in pan-cancers. Conclusions: RMI2 may serve as a potential biological target and probably assume a crucial part in tumorigenesis and progression. Impact Journals 2022-05-12 /pmc/articles/PMC9134953/ /pubmed/35552266 http://dx.doi.org/10.18632/aging.204076 Text en Copyright: © 2022 Wei et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Wei, Wei Ying, Xiaomei Chen, Liang Sun, Qingmei Lu, Xiaohuan Xia, Yang Xu, Rubin Zhu, Zhechen Zhang, Dong Tang, Qikai Li, Li Xie, Jiaheng Yu, Hongzhu RecQ mediated genome instability 2 (RMI2): a potential prognostic and immunological biomarker for pan-cancers |
title | RecQ mediated genome instability 2 (RMI2): a potential prognostic and immunological biomarker for pan-cancers |
title_full | RecQ mediated genome instability 2 (RMI2): a potential prognostic and immunological biomarker for pan-cancers |
title_fullStr | RecQ mediated genome instability 2 (RMI2): a potential prognostic and immunological biomarker for pan-cancers |
title_full_unstemmed | RecQ mediated genome instability 2 (RMI2): a potential prognostic and immunological biomarker for pan-cancers |
title_short | RecQ mediated genome instability 2 (RMI2): a potential prognostic and immunological biomarker for pan-cancers |
title_sort | recq mediated genome instability 2 (rmi2): a potential prognostic and immunological biomarker for pan-cancers |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9134953/ https://www.ncbi.nlm.nih.gov/pubmed/35552266 http://dx.doi.org/10.18632/aging.204076 |
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