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Towards robust diagnosis of COVID-19 using vision self-attention transformer
The outbreak of COVID-19, since its appearance, has affected about 200 countries and endangered millions of lives. COVID-19 is extremely contagious disease, and it can quickly incapacitate the healthcare systems if infected cases are not handled timely. Several Conventional Neural Networks (CNN) bas...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9134987/ https://www.ncbi.nlm.nih.gov/pubmed/35618740 http://dx.doi.org/10.1038/s41598-022-13039-x |
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author | Mehboob, Fozia Rauf, Abdul Jiang, Richard Saudagar, Abdul Khader Jilani Malik, Khalid Mahmood Khan, Muhammad Badruddin Hasnat, Mozaherul Hoque Abdul AlTameem, Abdullah AlKhathami, Mohammed |
author_facet | Mehboob, Fozia Rauf, Abdul Jiang, Richard Saudagar, Abdul Khader Jilani Malik, Khalid Mahmood Khan, Muhammad Badruddin Hasnat, Mozaherul Hoque Abdul AlTameem, Abdullah AlKhathami, Mohammed |
author_sort | Mehboob, Fozia |
collection | PubMed |
description | The outbreak of COVID-19, since its appearance, has affected about 200 countries and endangered millions of lives. COVID-19 is extremely contagious disease, and it can quickly incapacitate the healthcare systems if infected cases are not handled timely. Several Conventional Neural Networks (CNN) based techniques have been developed to diagnose the COVID-19. These techniques require a large, labelled dataset to train the algorithm fully, but there are not too many labelled datasets. To mitigate this problem and facilitate the diagnosis of COVID-19, we developed a self-attention transformer-based approach having self-attention mechanism using CT slices. The architecture of transformer can exploit the ample unlabelled datasets using pre-training. The paper aims to compare the performances of self-attention transformer-based approach with CNN and Ensemble classifiers for diagnosis of COVID-19 using binary Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) infection and multi-class Hybrid-learning for UnbiaSed predicTion of COVID-19 (HUST-19) CT scan dataset. To perform this comparison, we have tested Deep learning-based classifiers and ensemble classifiers with proposed approach using CT scan images. Proposed approach is more effective in detection of COVID-19 with an accuracy of 99.7% on multi-class HUST-19, whereas 98% on binary class SARS-CoV-2 dataset. Cross corpus evaluation achieves accuracy of 93% by training the model with Hust19 dataset and testing using Brazilian COVID dataset. |
format | Online Article Text |
id | pubmed-9134987 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-91349872022-05-26 Towards robust diagnosis of COVID-19 using vision self-attention transformer Mehboob, Fozia Rauf, Abdul Jiang, Richard Saudagar, Abdul Khader Jilani Malik, Khalid Mahmood Khan, Muhammad Badruddin Hasnat, Mozaherul Hoque Abdul AlTameem, Abdullah AlKhathami, Mohammed Sci Rep Article The outbreak of COVID-19, since its appearance, has affected about 200 countries and endangered millions of lives. COVID-19 is extremely contagious disease, and it can quickly incapacitate the healthcare systems if infected cases are not handled timely. Several Conventional Neural Networks (CNN) based techniques have been developed to diagnose the COVID-19. These techniques require a large, labelled dataset to train the algorithm fully, but there are not too many labelled datasets. To mitigate this problem and facilitate the diagnosis of COVID-19, we developed a self-attention transformer-based approach having self-attention mechanism using CT slices. The architecture of transformer can exploit the ample unlabelled datasets using pre-training. The paper aims to compare the performances of self-attention transformer-based approach with CNN and Ensemble classifiers for diagnosis of COVID-19 using binary Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) infection and multi-class Hybrid-learning for UnbiaSed predicTion of COVID-19 (HUST-19) CT scan dataset. To perform this comparison, we have tested Deep learning-based classifiers and ensemble classifiers with proposed approach using CT scan images. Proposed approach is more effective in detection of COVID-19 with an accuracy of 99.7% on multi-class HUST-19, whereas 98% on binary class SARS-CoV-2 dataset. Cross corpus evaluation achieves accuracy of 93% by training the model with Hust19 dataset and testing using Brazilian COVID dataset. Nature Publishing Group UK 2022-05-26 /pmc/articles/PMC9134987/ /pubmed/35618740 http://dx.doi.org/10.1038/s41598-022-13039-x Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Mehboob, Fozia Rauf, Abdul Jiang, Richard Saudagar, Abdul Khader Jilani Malik, Khalid Mahmood Khan, Muhammad Badruddin Hasnat, Mozaherul Hoque Abdul AlTameem, Abdullah AlKhathami, Mohammed Towards robust diagnosis of COVID-19 using vision self-attention transformer |
title | Towards robust diagnosis of COVID-19 using vision self-attention transformer |
title_full | Towards robust diagnosis of COVID-19 using vision self-attention transformer |
title_fullStr | Towards robust diagnosis of COVID-19 using vision self-attention transformer |
title_full_unstemmed | Towards robust diagnosis of COVID-19 using vision self-attention transformer |
title_short | Towards robust diagnosis of COVID-19 using vision self-attention transformer |
title_sort | towards robust diagnosis of covid-19 using vision self-attention transformer |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9134987/ https://www.ncbi.nlm.nih.gov/pubmed/35618740 http://dx.doi.org/10.1038/s41598-022-13039-x |
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