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Towards robust diagnosis of COVID-19 using vision self-attention transformer

The outbreak of COVID-19, since its appearance, has affected about 200 countries and endangered millions of lives. COVID-19 is extremely contagious disease, and it can quickly incapacitate the healthcare systems if infected cases are not handled timely. Several Conventional Neural Networks (CNN) bas...

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Autores principales: Mehboob, Fozia, Rauf, Abdul, Jiang, Richard, Saudagar, Abdul Khader Jilani, Malik, Khalid Mahmood, Khan, Muhammad Badruddin, Hasnat, Mozaherul Hoque Abdul, AlTameem, Abdullah, AlKhathami, Mohammed
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9134987/
https://www.ncbi.nlm.nih.gov/pubmed/35618740
http://dx.doi.org/10.1038/s41598-022-13039-x
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author Mehboob, Fozia
Rauf, Abdul
Jiang, Richard
Saudagar, Abdul Khader Jilani
Malik, Khalid Mahmood
Khan, Muhammad Badruddin
Hasnat, Mozaherul Hoque Abdul
AlTameem, Abdullah
AlKhathami, Mohammed
author_facet Mehboob, Fozia
Rauf, Abdul
Jiang, Richard
Saudagar, Abdul Khader Jilani
Malik, Khalid Mahmood
Khan, Muhammad Badruddin
Hasnat, Mozaherul Hoque Abdul
AlTameem, Abdullah
AlKhathami, Mohammed
author_sort Mehboob, Fozia
collection PubMed
description The outbreak of COVID-19, since its appearance, has affected about 200 countries and endangered millions of lives. COVID-19 is extremely contagious disease, and it can quickly incapacitate the healthcare systems if infected cases are not handled timely. Several Conventional Neural Networks (CNN) based techniques have been developed to diagnose the COVID-19. These techniques require a large, labelled dataset to train the algorithm fully, but there are not too many labelled datasets. To mitigate this problem and facilitate the diagnosis of COVID-19, we developed a self-attention transformer-based approach having self-attention mechanism using CT slices. The architecture of transformer can exploit the ample unlabelled datasets using pre-training. The paper aims to compare the performances of self-attention transformer-based approach with CNN and Ensemble classifiers for diagnosis of COVID-19 using binary Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) infection and multi-class Hybrid-learning for UnbiaSed predicTion of COVID-19 (HUST-19) CT scan dataset. To perform this comparison, we have tested Deep learning-based classifiers and ensemble classifiers with proposed approach using CT scan images. Proposed approach is more effective in detection of COVID-19 with an accuracy of 99.7% on multi-class HUST-19, whereas 98% on binary class SARS-CoV-2 dataset. Cross corpus evaluation achieves accuracy of 93% by training the model with Hust19 dataset and testing using Brazilian COVID dataset.
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spelling pubmed-91349872022-05-26 Towards robust diagnosis of COVID-19 using vision self-attention transformer Mehboob, Fozia Rauf, Abdul Jiang, Richard Saudagar, Abdul Khader Jilani Malik, Khalid Mahmood Khan, Muhammad Badruddin Hasnat, Mozaherul Hoque Abdul AlTameem, Abdullah AlKhathami, Mohammed Sci Rep Article The outbreak of COVID-19, since its appearance, has affected about 200 countries and endangered millions of lives. COVID-19 is extremely contagious disease, and it can quickly incapacitate the healthcare systems if infected cases are not handled timely. Several Conventional Neural Networks (CNN) based techniques have been developed to diagnose the COVID-19. These techniques require a large, labelled dataset to train the algorithm fully, but there are not too many labelled datasets. To mitigate this problem and facilitate the diagnosis of COVID-19, we developed a self-attention transformer-based approach having self-attention mechanism using CT slices. The architecture of transformer can exploit the ample unlabelled datasets using pre-training. The paper aims to compare the performances of self-attention transformer-based approach with CNN and Ensemble classifiers for diagnosis of COVID-19 using binary Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) infection and multi-class Hybrid-learning for UnbiaSed predicTion of COVID-19 (HUST-19) CT scan dataset. To perform this comparison, we have tested Deep learning-based classifiers and ensemble classifiers with proposed approach using CT scan images. Proposed approach is more effective in detection of COVID-19 with an accuracy of 99.7% on multi-class HUST-19, whereas 98% on binary class SARS-CoV-2 dataset. Cross corpus evaluation achieves accuracy of 93% by training the model with Hust19 dataset and testing using Brazilian COVID dataset. Nature Publishing Group UK 2022-05-26 /pmc/articles/PMC9134987/ /pubmed/35618740 http://dx.doi.org/10.1038/s41598-022-13039-x Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Mehboob, Fozia
Rauf, Abdul
Jiang, Richard
Saudagar, Abdul Khader Jilani
Malik, Khalid Mahmood
Khan, Muhammad Badruddin
Hasnat, Mozaherul Hoque Abdul
AlTameem, Abdullah
AlKhathami, Mohammed
Towards robust diagnosis of COVID-19 using vision self-attention transformer
title Towards robust diagnosis of COVID-19 using vision self-attention transformer
title_full Towards robust diagnosis of COVID-19 using vision self-attention transformer
title_fullStr Towards robust diagnosis of COVID-19 using vision self-attention transformer
title_full_unstemmed Towards robust diagnosis of COVID-19 using vision self-attention transformer
title_short Towards robust diagnosis of COVID-19 using vision self-attention transformer
title_sort towards robust diagnosis of covid-19 using vision self-attention transformer
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9134987/
https://www.ncbi.nlm.nih.gov/pubmed/35618740
http://dx.doi.org/10.1038/s41598-022-13039-x
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