Cargando…

Characterization of nucleosome sediments for protein interaction studies by solid-state NMR spectroscopy

Regulation of DNA-templated processes such as gene transcription and DNA repair depend on the interaction of a wide range of proteins with the nucleosome, the fundamental building block of chromatin. Both solution and solid-state NMR spectroscopy have become an attractive approach to study the dynam...

Descripción completa

Detalles Bibliográficos
Autores principales:	le Paige, Ulric B., Xiang, ShengQi, Hendrix, Marco M. R. M., Zhang, Yi, Folkers, Gert E., Weingarth, Markus, Bonvin, Alexandre M. J. J., Kutateladze, Tatiana G., Voets, Ilja K., Baldus, Marc, van Ingen, Hugo
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Copernicus GmbH 2021
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9135053/ https://www.ncbi.nlm.nih.gov/pubmed/35647606 http://dx.doi.org/10.5194/mr-2-187-2021

Ejemplares similares

Site‐Specific Studies of Nucleosome Interactions by Solid‐State NMR Spectroscopy
por: Xiang, ShengQi, et al.
Publicado: (2018)

DNP‐Supported Solid‐State NMR Spectroscopy of Proteins Inside Mammalian Cells
por: Narasimhan, Siddarth, et al.
Publicado: (2019)

Atomic-level insight into mRNA processing bodies by combining solid and solution-state NMR spectroscopy
por: Damman, Reinier, et al.
Publicado: (2019)

An Efficient Labelling Approach to Harness Backbone and Side-Chain Protons in (1)H-Detected Solid-State NMR Spectroscopy
por: Mance, Deni, et al.
Publicado: (2015)

Efficient cellular solid-state NMR of membrane proteins by targeted protein labeling
por: Baker, Lindsay A., et al.
Publicado: (2015)

Formation of the β-barrel assembly machinery complex in lipid bilayers as seen by solid-state NMR
por: Pinto, Cecilia, et al.
Publicado: (2018)

Specific Lipid Studies in Complex Membranes by Solid‐State NMR Spectroscopy
por: van Beekveld, Roy A. M., et al.
Publicado: (2022)

Direct observation of dynamic protein interactions involving human microtubules using solid-state NMR spectroscopy
por: Luo, Yanzhang, et al.
Publicado: (2020)

Fractional deuteration applied to biomolecular solid-state NMR spectroscopy
por: Nand, Deepak, et al.
Publicado: (2011)

(1)H‐Detected Solid‐State NMR Studies of Water‐Inaccessible Proteins In Vitro and In Situ
por: Medeiros‐Silva, João, et al.
Publicado: (2016)

Divide and Conquer: A Tailored Solid‐state NMR Approach to Study Large Membrane Protein Complexes
por: Xiang, ShengQi, et al.
Publicado: (2022)

Protocol to identify drug-binding sites in proteins using solution NMR spectroscopy
por: Penumutchu, Srinivasa, et al.
Publicado: (2022)

Solid-state NMR [(13)C,(15)N] resonance assignments of the nucleotide-binding domain of a bacterial cyclic nucleotide-gated channel
por: Cukkemane, Abhishek, et al.
Publicado: (2012)

A high-field cellular DNP-supported solid-state NMR approach to study proteins with sub-cellular specificity
por: Beriashvili, David, et al.
Publicado: (2023)

(1)H-detected characterization of carbon–carbon networks in highly flexible protonated biomolecules using MAS NMR
por: Bahri, Salima, et al.
Publicado: (2023)

Kinetic analysis of protein aggregation monitored by real-time 2D solid-state NMR spectroscopy
por: Etzkorn, Manuel, et al.
Publicado: (2011)

High-resolution NMR studies of antibiotics in cellular membranes
por: Medeiros-Silva, João, et al.
Publicado: (2018)

Mapping the electrostatic potential of the nucleosome acidic patch
por: Zhang, Heyi, et al.
Publicado: (2021)

High-Resolution 3D Structure Determination of Kaliotoxin by Solid-State NMR Spectroscopy
por: Korukottu, Jegannath, et al.
Publicado: (2008)

Structural basis of nucleic acid binding by Nicotiana tabacum glycine-rich RNA-binding protein: implications for its RNA chaperone function
por: Khan, Fariha, et al.
Publicado: (2014)

Structural basis for binding diversity of acetyltransferase p300 to the nucleosome
por: Hatazawa, Suguru, et al.
Publicado: (2022)

Characterization of the cell wall of a mushroom forming fungus at atomic resolution using solid-state NMR spectroscopy
por: Ehren, Helena Leona, et al.
Publicado: (2020)

Development of in vitro-grown spheroids as a 3D tumor model system for solid-state NMR spectroscopy
por: Damman, Reinier, et al.
Publicado: (2020)

Structural and biophysical characterization of the nucleosome-binding PZP domain
por: Klein, Brianna J., et al.
Publicado: (2021)

Nanoscopy of single antifreeze proteins reveals that reversible ice binding is sufficient for ice recrystallization inhibition but not thermal hysteresis
por: Tas, Roderick P., et al.
Publicado: (2023)

Biological solid-state NMR: Integrative across different scientific disciplines
por: Baldus, Marc
Publicado: (2022)

Nucleosomal DNA binding drives the recognition of H3K36-methylated nucleosomes by the PSIP1-PWWP domain
por: van Nuland, Rick, et al.
Publicado: (2013)

iSEE: Interface structure, evolution, and energy‐based machine learning predictor of binding affinity changes upon mutations
por: Geng, Cunliang, et al.
Publicado: (2018)

Light‐Induced Uncaging for Time‐Resolved Observations of Biochemical Reactions by MAS NMR Spectroscopy
por: de Mos, Julian, et al.
Publicado: (2020)

Performance of the WeNMR CS-Rosetta3 web server in CASD-NMR
por: van der Schot, Gijs, et al.
Publicado: (2015)

PHF1 Tudor and N-terminal domains synergistically target partially unwrapped nucleosomes to increase DNA accessibility
por: Gibson, Matthew D., et al.
Publicado: (2017)

Combined (1)H-Detected Solid-State NMR Spectroscopy and Electron Cryotomography to Study Membrane Proteins across Resolutions in Native Environments
por: Baker, Lindsay A., et al.
Publicado: (2018)

Intermolecular Interactions and Protein Dynamics by Solid‐State NMR Spectroscopy
por: Lamley, Jonathan M., et al.
Publicado: (2015)

Intermolecular Interactions and Protein Dynamics by Solid‐State NMR Spectroscopy
por: Lamley, Jonathan M., et al.
Publicado: (2015)

Supramolecular Organization and Functional Implications of K(+) Channel Clusters in Membranes
por: Visscher, Koen M., et al.
Publicado: (2017)

Traditional Biomolecular Structure Determination by NMR Spectroscopy Allows for Major Errors
por: Nabuurs, Sander B, et al.
Publicado: (2006)

RNA structure determination by solid-state NMR spectroscopy
por: Marchanka, Alexander, et al.
Publicado: (2015)

Quadrupolar Isotope-Correlation Spectroscopy in Solid-State NMR
por: Wolf, Tamar, et al.
Publicado: (2022)

High-resolution NMR in the native state
por: Baldus, Marc
Publicado: (2017)

Mimicking the Nucleosomal Context in Peptide-Based Binders of a H3K36me Reader Increases Binding Affinity While Altering the Binding Mode
por: Horn, Velten, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_dtifrlralbb6sguh32h485vb71