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KRAS is vulnerable to reversible switch-II pocket engagement in cells

Current small-molecule inhibitors of KRAS(G12C) bind irreversibly in the switch-II pocket (SII-P), exploiting the strong nucleophilicity of the acquired cysteine as well as the preponderance of the GDP-bound form of this mutant. Nevertheless, many oncogenic KRAS mutants lack these two features, and...

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Autores principales: Vasta, James D., Peacock, D. Matthew, Zheng, Qinheng, Walker, Joel A., Zhang, Ziyang, Zimprich, Chad A., Thomas, Morgan R., Beck, Michael T., Binkowski, Brock F., Corona, Cesear R., Robers, Matthew B., Shokat, Kevan M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group US 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9135634/
https://www.ncbi.nlm.nih.gov/pubmed/35314814
http://dx.doi.org/10.1038/s41589-022-00985-w
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author Vasta, James D.
Peacock, D. Matthew
Zheng, Qinheng
Walker, Joel A.
Zhang, Ziyang
Zimprich, Chad A.
Thomas, Morgan R.
Beck, Michael T.
Binkowski, Brock F.
Corona, Cesear R.
Robers, Matthew B.
Shokat, Kevan M.
author_facet Vasta, James D.
Peacock, D. Matthew
Zheng, Qinheng
Walker, Joel A.
Zhang, Ziyang
Zimprich, Chad A.
Thomas, Morgan R.
Beck, Michael T.
Binkowski, Brock F.
Corona, Cesear R.
Robers, Matthew B.
Shokat, Kevan M.
author_sort Vasta, James D.
collection PubMed
description Current small-molecule inhibitors of KRAS(G12C) bind irreversibly in the switch-II pocket (SII-P), exploiting the strong nucleophilicity of the acquired cysteine as well as the preponderance of the GDP-bound form of this mutant. Nevertheless, many oncogenic KRAS mutants lack these two features, and it remains unknown whether targeting the SII-P is a practical therapeutic approach for KRAS mutants beyond G12C. Here we use NMR spectroscopy and a cellular KRAS engagement assay to address this question by examining a collection of SII-P ligands from the literature and from our own laboratory. We show that the SII-Ps of many KRAS hotspot (G12, G13, Q61) mutants are accessible using noncovalent ligands, and that this accessibility is not necessarily coupled to the GDP state of KRAS. The results we describe here emphasize the SII-P as a privileged drug-binding site on KRAS and unveil new therapeutic opportunities in RAS-driven cancer. [Image: see text]
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spelling pubmed-91356342022-05-28 KRAS is vulnerable to reversible switch-II pocket engagement in cells Vasta, James D. Peacock, D. Matthew Zheng, Qinheng Walker, Joel A. Zhang, Ziyang Zimprich, Chad A. Thomas, Morgan R. Beck, Michael T. Binkowski, Brock F. Corona, Cesear R. Robers, Matthew B. Shokat, Kevan M. Nat Chem Biol Article Current small-molecule inhibitors of KRAS(G12C) bind irreversibly in the switch-II pocket (SII-P), exploiting the strong nucleophilicity of the acquired cysteine as well as the preponderance of the GDP-bound form of this mutant. Nevertheless, many oncogenic KRAS mutants lack these two features, and it remains unknown whether targeting the SII-P is a practical therapeutic approach for KRAS mutants beyond G12C. Here we use NMR spectroscopy and a cellular KRAS engagement assay to address this question by examining a collection of SII-P ligands from the literature and from our own laboratory. We show that the SII-Ps of many KRAS hotspot (G12, G13, Q61) mutants are accessible using noncovalent ligands, and that this accessibility is not necessarily coupled to the GDP state of KRAS. The results we describe here emphasize the SII-P as a privileged drug-binding site on KRAS and unveil new therapeutic opportunities in RAS-driven cancer. [Image: see text] Nature Publishing Group US 2022-03-21 2022 /pmc/articles/PMC9135634/ /pubmed/35314814 http://dx.doi.org/10.1038/s41589-022-00985-w Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Vasta, James D.
Peacock, D. Matthew
Zheng, Qinheng
Walker, Joel A.
Zhang, Ziyang
Zimprich, Chad A.
Thomas, Morgan R.
Beck, Michael T.
Binkowski, Brock F.
Corona, Cesear R.
Robers, Matthew B.
Shokat, Kevan M.
KRAS is vulnerable to reversible switch-II pocket engagement in cells
title KRAS is vulnerable to reversible switch-II pocket engagement in cells
title_full KRAS is vulnerable to reversible switch-II pocket engagement in cells
title_fullStr KRAS is vulnerable to reversible switch-II pocket engagement in cells
title_full_unstemmed KRAS is vulnerable to reversible switch-II pocket engagement in cells
title_short KRAS is vulnerable to reversible switch-II pocket engagement in cells
title_sort kras is vulnerable to reversible switch-ii pocket engagement in cells
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9135634/
https://www.ncbi.nlm.nih.gov/pubmed/35314814
http://dx.doi.org/10.1038/s41589-022-00985-w
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