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Combining rapid antigen testing and syndromic surveillance improves community-based COVID-19 detection in a low-income country

Diagnostics for COVID-19 detection are limited in many settings. Syndromic surveillance is often the only means to identify cases but lacks specificity. Rapid antigen testing is inexpensive and easy-to-deploy but can lack sensitivity. We examine how combining these approaches can improve surveillanc...

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Autores principales: Chadwick, Fergus J., Clark, Jessica, Chowdhury, Shayan, Chowdhury, Tasnuva, Pascall, David J., Haddou, Yacob, Andrecka, Joanna, Kundegorski, Mikolaj, Wilkie, Craig, Brum, Eric, Shirin, Tahmina, Alamgir, A. S. M., Rahman, Mahbubur, Alam, Ahmed Nawsher, Khan, Farzana, Swallow, Ben, Mair, Frances S., Illian, Janine, Trotter, Caroline L., Hill, Davina L., Husmeier, Dirk, Matthiopoulos, Jason, Hampson, Katie, Sania, Ayesha
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9135686/
https://www.ncbi.nlm.nih.gov/pubmed/35618714
http://dx.doi.org/10.1038/s41467-022-30640-w
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author Chadwick, Fergus J.
Clark, Jessica
Chowdhury, Shayan
Chowdhury, Tasnuva
Pascall, David J.
Haddou, Yacob
Andrecka, Joanna
Kundegorski, Mikolaj
Wilkie, Craig
Brum, Eric
Shirin, Tahmina
Alamgir, A. S. M.
Rahman, Mahbubur
Alam, Ahmed Nawsher
Khan, Farzana
Swallow, Ben
Mair, Frances S.
Illian, Janine
Trotter, Caroline L.
Hill, Davina L.
Husmeier, Dirk
Matthiopoulos, Jason
Hampson, Katie
Sania, Ayesha
author_facet Chadwick, Fergus J.
Clark, Jessica
Chowdhury, Shayan
Chowdhury, Tasnuva
Pascall, David J.
Haddou, Yacob
Andrecka, Joanna
Kundegorski, Mikolaj
Wilkie, Craig
Brum, Eric
Shirin, Tahmina
Alamgir, A. S. M.
Rahman, Mahbubur
Alam, Ahmed Nawsher
Khan, Farzana
Swallow, Ben
Mair, Frances S.
Illian, Janine
Trotter, Caroline L.
Hill, Davina L.
Husmeier, Dirk
Matthiopoulos, Jason
Hampson, Katie
Sania, Ayesha
author_sort Chadwick, Fergus J.
collection PubMed
description Diagnostics for COVID-19 detection are limited in many settings. Syndromic surveillance is often the only means to identify cases but lacks specificity. Rapid antigen testing is inexpensive and easy-to-deploy but can lack sensitivity. We examine how combining these approaches can improve surveillance for guiding interventions in low-income communities in Dhaka, Bangladesh. Rapid-antigen-testing with PCR validation was performed on 1172 symptomatically-identified individuals in their homes. Statistical models were fitted to predict PCR-status using rapid-antigen-test results, syndromic data, and their combination. Under contrasting epidemiological scenarios, the models’ predictive and classification performance was evaluated. Models combining rapid-antigen-testing and syndromic data yielded equal-to-better performance to rapid-antigen-test-only models across all scenarios with their best performance in the epidemic growth scenario. These results show that drawing on complementary strengths across rapid diagnostics, improves COVID-19 detection, and reduces false-positive and -negative diagnoses to match local requirements; improvements achievable without additional expense, or changes for patients or practitioners.
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spelling pubmed-91356862022-05-28 Combining rapid antigen testing and syndromic surveillance improves community-based COVID-19 detection in a low-income country Chadwick, Fergus J. Clark, Jessica Chowdhury, Shayan Chowdhury, Tasnuva Pascall, David J. Haddou, Yacob Andrecka, Joanna Kundegorski, Mikolaj Wilkie, Craig Brum, Eric Shirin, Tahmina Alamgir, A. S. M. Rahman, Mahbubur Alam, Ahmed Nawsher Khan, Farzana Swallow, Ben Mair, Frances S. Illian, Janine Trotter, Caroline L. Hill, Davina L. Husmeier, Dirk Matthiopoulos, Jason Hampson, Katie Sania, Ayesha Nat Commun Article Diagnostics for COVID-19 detection are limited in many settings. Syndromic surveillance is often the only means to identify cases but lacks specificity. Rapid antigen testing is inexpensive and easy-to-deploy but can lack sensitivity. We examine how combining these approaches can improve surveillance for guiding interventions in low-income communities in Dhaka, Bangladesh. Rapid-antigen-testing with PCR validation was performed on 1172 symptomatically-identified individuals in their homes. Statistical models were fitted to predict PCR-status using rapid-antigen-test results, syndromic data, and their combination. Under contrasting epidemiological scenarios, the models’ predictive and classification performance was evaluated. Models combining rapid-antigen-testing and syndromic data yielded equal-to-better performance to rapid-antigen-test-only models across all scenarios with their best performance in the epidemic growth scenario. These results show that drawing on complementary strengths across rapid diagnostics, improves COVID-19 detection, and reduces false-positive and -negative diagnoses to match local requirements; improvements achievable without additional expense, or changes for patients or practitioners. Nature Publishing Group UK 2022-05-26 /pmc/articles/PMC9135686/ /pubmed/35618714 http://dx.doi.org/10.1038/s41467-022-30640-w Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Chadwick, Fergus J.
Clark, Jessica
Chowdhury, Shayan
Chowdhury, Tasnuva
Pascall, David J.
Haddou, Yacob
Andrecka, Joanna
Kundegorski, Mikolaj
Wilkie, Craig
Brum, Eric
Shirin, Tahmina
Alamgir, A. S. M.
Rahman, Mahbubur
Alam, Ahmed Nawsher
Khan, Farzana
Swallow, Ben
Mair, Frances S.
Illian, Janine
Trotter, Caroline L.
Hill, Davina L.
Husmeier, Dirk
Matthiopoulos, Jason
Hampson, Katie
Sania, Ayesha
Combining rapid antigen testing and syndromic surveillance improves community-based COVID-19 detection in a low-income country
title Combining rapid antigen testing and syndromic surveillance improves community-based COVID-19 detection in a low-income country
title_full Combining rapid antigen testing and syndromic surveillance improves community-based COVID-19 detection in a low-income country
title_fullStr Combining rapid antigen testing and syndromic surveillance improves community-based COVID-19 detection in a low-income country
title_full_unstemmed Combining rapid antigen testing and syndromic surveillance improves community-based COVID-19 detection in a low-income country
title_short Combining rapid antigen testing and syndromic surveillance improves community-based COVID-19 detection in a low-income country
title_sort combining rapid antigen testing and syndromic surveillance improves community-based covid-19 detection in a low-income country
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9135686/
https://www.ncbi.nlm.nih.gov/pubmed/35618714
http://dx.doi.org/10.1038/s41467-022-30640-w
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