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Growth‐dependent heterogeneity in the DNA damage response in Escherichia coli

In natural environments, bacteria are frequently exposed to sub‐lethal levels of DNA damage, which leads to the induction of a stress response (the SOS response in Escherichia coli). Natural environments also vary in nutrient availability, resulting in distinct physiological changes in bacteria, whi...

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Autores principales: Jaramillo‐Riveri, Sebastián, Broughton, James, McVey, Alexander, Pilizota, Teuta, Scott, Matthew, El Karoui, Meriem
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9136515/
https://www.ncbi.nlm.nih.gov/pubmed/35620827
http://dx.doi.org/10.15252/msb.202110441
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author Jaramillo‐Riveri, Sebastián
Broughton, James
McVey, Alexander
Pilizota, Teuta
Scott, Matthew
El Karoui, Meriem
author_facet Jaramillo‐Riveri, Sebastián
Broughton, James
McVey, Alexander
Pilizota, Teuta
Scott, Matthew
El Karoui, Meriem
author_sort Jaramillo‐Riveri, Sebastián
collection PubMed
description In natural environments, bacteria are frequently exposed to sub‐lethal levels of DNA damage, which leads to the induction of a stress response (the SOS response in Escherichia coli). Natural environments also vary in nutrient availability, resulting in distinct physiological changes in bacteria, which may have direct implications on their capacity to repair their chromosomes. Here, we evaluated the impact of varying the nutrient availability on the expression of the SOS response induced by chronic sub‐lethal DNA damage in E. coli. We found heterogeneous expression of the SOS regulon at the single‐cell level in all growth conditions. Surprisingly, we observed a larger fraction of high SOS‐induced cells in slow growth as compared with fast growth, despite a higher rate of SOS induction in fast growth. The result can be explained by the dynamic balance between the rate of SOS induction and the division rates of cells exposed to DNA damage. Taken together, our data illustrate how cell division and physiology come together to produce growth‐dependent heterogeneity in the DNA damage response.
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spelling pubmed-91365152022-06-04 Growth‐dependent heterogeneity in the DNA damage response in Escherichia coli Jaramillo‐Riveri, Sebastián Broughton, James McVey, Alexander Pilizota, Teuta Scott, Matthew El Karoui, Meriem Mol Syst Biol Articles In natural environments, bacteria are frequently exposed to sub‐lethal levels of DNA damage, which leads to the induction of a stress response (the SOS response in Escherichia coli). Natural environments also vary in nutrient availability, resulting in distinct physiological changes in bacteria, which may have direct implications on their capacity to repair their chromosomes. Here, we evaluated the impact of varying the nutrient availability on the expression of the SOS response induced by chronic sub‐lethal DNA damage in E. coli. We found heterogeneous expression of the SOS regulon at the single‐cell level in all growth conditions. Surprisingly, we observed a larger fraction of high SOS‐induced cells in slow growth as compared with fast growth, despite a higher rate of SOS induction in fast growth. The result can be explained by the dynamic balance between the rate of SOS induction and the division rates of cells exposed to DNA damage. Taken together, our data illustrate how cell division and physiology come together to produce growth‐dependent heterogeneity in the DNA damage response. John Wiley and Sons Inc. 2022-05-27 /pmc/articles/PMC9136515/ /pubmed/35620827 http://dx.doi.org/10.15252/msb.202110441 Text en © 2022 The Authors. Published under the terms of the CC BY 4.0 license https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Jaramillo‐Riveri, Sebastián
Broughton, James
McVey, Alexander
Pilizota, Teuta
Scott, Matthew
El Karoui, Meriem
Growth‐dependent heterogeneity in the DNA damage response in Escherichia coli
title Growth‐dependent heterogeneity in the DNA damage response in Escherichia coli
title_full Growth‐dependent heterogeneity in the DNA damage response in Escherichia coli
title_fullStr Growth‐dependent heterogeneity in the DNA damage response in Escherichia coli
title_full_unstemmed Growth‐dependent heterogeneity in the DNA damage response in Escherichia coli
title_short Growth‐dependent heterogeneity in the DNA damage response in Escherichia coli
title_sort growth‐dependent heterogeneity in the dna damage response in escherichia coli
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9136515/
https://www.ncbi.nlm.nih.gov/pubmed/35620827
http://dx.doi.org/10.15252/msb.202110441
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