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B-Cell Epitope Mapping from Eight Antigens of Candida albicans to Design a Novel Diagnostic Kit: An Immunoinformatics Approach

Invasive candidiasis is an emerging fungal infection and a leading cause of morbidity in health care facilities. Despite advances in antifungal therapy, increased antifungal drug resistance in Candida albicans has enhanced patient fatality. The most common method for Candida albicans diagnosing is b...

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Autores principales: Vahedi, Farzaneh, Ghasemi, Younes, Atapour, Amir, Zomorodian, Kamiar, Ranjbar, Maryam, Monabati, Ahmad, Nezafat, Navid, Savardashtaki, Amir
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Netherlands 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9136830/
https://www.ncbi.nlm.nih.gov/pubmed/35669279
http://dx.doi.org/10.1007/s10989-022-10413-1
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author Vahedi, Farzaneh
Ghasemi, Younes
Atapour, Amir
Zomorodian, Kamiar
Ranjbar, Maryam
Monabati, Ahmad
Nezafat, Navid
Savardashtaki, Amir
author_facet Vahedi, Farzaneh
Ghasemi, Younes
Atapour, Amir
Zomorodian, Kamiar
Ranjbar, Maryam
Monabati, Ahmad
Nezafat, Navid
Savardashtaki, Amir
author_sort Vahedi, Farzaneh
collection PubMed
description Invasive candidiasis is an emerging fungal infection and a leading cause of morbidity in health care facilities. Despite advances in antifungal therapy, increased antifungal drug resistance in Candida albicans has enhanced patient fatality. The most common method for Candida albicans diagnosing is blood culture, which has low sensitivity. Therefore, there is an urgent need to establish a valid diagnostic method. Our study aimed to use the bioinformatics approach to design a diagnostic kit for detecting Candida albicans with high sensitivity and specificity. Eight antigenic proteins of Candida albicans (HYR1, HWP1, ECE1, ALS, EAP1, SAP1, BGL2, and MET6) were selected. Next, a construct containing different immunodominant B-cell epitopes was derived from the antigens and connected using a suitable linker. Different properties of the final construct, such as physicochemical properties, were evaluated. Moreover, the designed construct underwent 3D modeling, reverse translation, and codon optimization. The results confirmed that the designed construct could identify Candida albicans with high sensitivity and specificity in serum samples of patients with invasive candidiasis. However, experimental studies are needed for final confirmation. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s10989-022-10413-1.
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spelling pubmed-91368302022-06-02 B-Cell Epitope Mapping from Eight Antigens of Candida albicans to Design a Novel Diagnostic Kit: An Immunoinformatics Approach Vahedi, Farzaneh Ghasemi, Younes Atapour, Amir Zomorodian, Kamiar Ranjbar, Maryam Monabati, Ahmad Nezafat, Navid Savardashtaki, Amir Int J Pept Res Ther Article Invasive candidiasis is an emerging fungal infection and a leading cause of morbidity in health care facilities. Despite advances in antifungal therapy, increased antifungal drug resistance in Candida albicans has enhanced patient fatality. The most common method for Candida albicans diagnosing is blood culture, which has low sensitivity. Therefore, there is an urgent need to establish a valid diagnostic method. Our study aimed to use the bioinformatics approach to design a diagnostic kit for detecting Candida albicans with high sensitivity and specificity. Eight antigenic proteins of Candida albicans (HYR1, HWP1, ECE1, ALS, EAP1, SAP1, BGL2, and MET6) were selected. Next, a construct containing different immunodominant B-cell epitopes was derived from the antigens and connected using a suitable linker. Different properties of the final construct, such as physicochemical properties, were evaluated. Moreover, the designed construct underwent 3D modeling, reverse translation, and codon optimization. The results confirmed that the designed construct could identify Candida albicans with high sensitivity and specificity in serum samples of patients with invasive candidiasis. However, experimental studies are needed for final confirmation. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s10989-022-10413-1. Springer Netherlands 2022-05-27 2022 /pmc/articles/PMC9136830/ /pubmed/35669279 http://dx.doi.org/10.1007/s10989-022-10413-1 Text en © The Author(s), under exclusive licence to Springer Nature B.V. 2022 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Article
Vahedi, Farzaneh
Ghasemi, Younes
Atapour, Amir
Zomorodian, Kamiar
Ranjbar, Maryam
Monabati, Ahmad
Nezafat, Navid
Savardashtaki, Amir
B-Cell Epitope Mapping from Eight Antigens of Candida albicans to Design a Novel Diagnostic Kit: An Immunoinformatics Approach
title B-Cell Epitope Mapping from Eight Antigens of Candida albicans to Design a Novel Diagnostic Kit: An Immunoinformatics Approach
title_full B-Cell Epitope Mapping from Eight Antigens of Candida albicans to Design a Novel Diagnostic Kit: An Immunoinformatics Approach
title_fullStr B-Cell Epitope Mapping from Eight Antigens of Candida albicans to Design a Novel Diagnostic Kit: An Immunoinformatics Approach
title_full_unstemmed B-Cell Epitope Mapping from Eight Antigens of Candida albicans to Design a Novel Diagnostic Kit: An Immunoinformatics Approach
title_short B-Cell Epitope Mapping from Eight Antigens of Candida albicans to Design a Novel Diagnostic Kit: An Immunoinformatics Approach
title_sort b-cell epitope mapping from eight antigens of candida albicans to design a novel diagnostic kit: an immunoinformatics approach
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9136830/
https://www.ncbi.nlm.nih.gov/pubmed/35669279
http://dx.doi.org/10.1007/s10989-022-10413-1
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