Cargando…
Comparison of Grand Canonical and Conventional Molecular Dynamics Simulation Methods for Protein-Bound Water Networks
[Image: see text] Water molecules play important roles in all biochemical processes. Therefore, it is of key importance to obtain information of the structure, dynamics, and thermodynamics of water molecules around proteins. Numerous computational methods have been suggested with this aim. In this s...
Autores principales: | Ekberg, Vilhelm, Samways, Marley L., Misini Ignjatović, Majda, Essex, Jonathan W., Ryde, Ulf |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
|
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9136951/ https://www.ncbi.nlm.nih.gov/pubmed/35637786 http://dx.doi.org/10.1021/acsphyschemau.1c00052 |
Ejemplares similares
-
Water structure in solution and crystal molecular dynamics simulations compared to protein crystal structures
por: Caldararu, Octav, et al.
Publicado: (2020) -
Binding-affinity predictions of HSP90 in the D3R Grand Challenge 2015 with docking, MM/GBSA, QM/MM, and free-energy simulations
por: Misini Ignjatović, Majda, et al.
Publicado: (2016) -
Enhanced Grand
Canonical Sampling of Occluded Water
Sites Using Nonequilibrium Candidate Monte Carlo
por: Melling, Oliver J., et al.
Publicado: (2023) -
Entropy–Entropy Compensation between the Protein,
Ligand, and Solvent Degrees of Freedom Fine-Tunes Affinity in Ligand
Binding to Galectin-3C
por: Wallerstein, Johan, et al.
Publicado: (2021) -
On the Use of Interaction Entropy and Related Methods
to Estimate Binding Entropies
por: Ekberg, Vilhelm, et al.
Publicado: (2021)