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Risk prediction of 30-day mortality after stroke using machine learning: a nationwide registry-based cohort study
BACKGROUNDS: We aimed to develop and validate machine learning (ML) models for 30-day stroke mortality for mortality risk stratification and as benchmarking models for quality improvement in stroke care. METHODS: Data from the UK Sentinel Stroke National Audit Program between 2013 to 2019 were used....
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9137068/ https://www.ncbi.nlm.nih.gov/pubmed/35624434 http://dx.doi.org/10.1186/s12883-022-02722-1 |
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author | Wang, Wenjuan Rudd, Anthony G. Wang, Yanzhong Curcin, Vasa Wolfe, Charles D. Peek, Niels Bray, Benjamin |
author_facet | Wang, Wenjuan Rudd, Anthony G. Wang, Yanzhong Curcin, Vasa Wolfe, Charles D. Peek, Niels Bray, Benjamin |
author_sort | Wang, Wenjuan |
collection | PubMed |
description | BACKGROUNDS: We aimed to develop and validate machine learning (ML) models for 30-day stroke mortality for mortality risk stratification and as benchmarking models for quality improvement in stroke care. METHODS: Data from the UK Sentinel Stroke National Audit Program between 2013 to 2019 were used. Models were developed using XGBoost, Logistic Regression (LR), LR with elastic net with/without interaction terms using 80% randomly selected admissions from 2013 to 2018, validated on the 20% remaining admissions, and temporally validated on 2019 admissions. The models were developed with 30 variables. A reference model was developed using LR and 4 variables. Performances of all models was evaluated in terms of discrimination, calibration, reclassification, Brier scores and Decision-curves. RESULTS: In total, 488,497 stroke patients with a 12.3% 30-day mortality rate were included in the analysis. In 2019 temporal validation set, XGBoost model obtained the lowest Brier score (0.069 (95% CI: 0.068–0.071)) and the highest area under the ROC curve (AUC) (0.895 (95% CI: 0.891–0.900)) which outperformed LR reference model by 0.04 AUC (p < 0.001) and LR with elastic net and interaction term model by 0.003 AUC (p < 0.001). All models were perfectly calibrated for low (< 5%) and moderate risk groups (5–15%) and ≈1% underestimation for high-risk groups (> 15%). The XGBoost model reclassified 1648 (8.1%) low-risk cases by the LR reference model as being moderate or high-risk and gained the most net benefit in decision curve analysis. CONCLUSIONS: All models with 30 variables are potentially useful as benchmarking models in stroke-care quality improvement with ML slightly outperforming others. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12883-022-02722-1. |
format | Online Article Text |
id | pubmed-9137068 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-91370682022-05-28 Risk prediction of 30-day mortality after stroke using machine learning: a nationwide registry-based cohort study Wang, Wenjuan Rudd, Anthony G. Wang, Yanzhong Curcin, Vasa Wolfe, Charles D. Peek, Niels Bray, Benjamin BMC Neurol Research BACKGROUNDS: We aimed to develop and validate machine learning (ML) models for 30-day stroke mortality for mortality risk stratification and as benchmarking models for quality improvement in stroke care. METHODS: Data from the UK Sentinel Stroke National Audit Program between 2013 to 2019 were used. Models were developed using XGBoost, Logistic Regression (LR), LR with elastic net with/without interaction terms using 80% randomly selected admissions from 2013 to 2018, validated on the 20% remaining admissions, and temporally validated on 2019 admissions. The models were developed with 30 variables. A reference model was developed using LR and 4 variables. Performances of all models was evaluated in terms of discrimination, calibration, reclassification, Brier scores and Decision-curves. RESULTS: In total, 488,497 stroke patients with a 12.3% 30-day mortality rate were included in the analysis. In 2019 temporal validation set, XGBoost model obtained the lowest Brier score (0.069 (95% CI: 0.068–0.071)) and the highest area under the ROC curve (AUC) (0.895 (95% CI: 0.891–0.900)) which outperformed LR reference model by 0.04 AUC (p < 0.001) and LR with elastic net and interaction term model by 0.003 AUC (p < 0.001). All models were perfectly calibrated for low (< 5%) and moderate risk groups (5–15%) and ≈1% underestimation for high-risk groups (> 15%). The XGBoost model reclassified 1648 (8.1%) low-risk cases by the LR reference model as being moderate or high-risk and gained the most net benefit in decision curve analysis. CONCLUSIONS: All models with 30 variables are potentially useful as benchmarking models in stroke-care quality improvement with ML slightly outperforming others. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12883-022-02722-1. BioMed Central 2022-05-27 /pmc/articles/PMC9137068/ /pubmed/35624434 http://dx.doi.org/10.1186/s12883-022-02722-1 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Wang, Wenjuan Rudd, Anthony G. Wang, Yanzhong Curcin, Vasa Wolfe, Charles D. Peek, Niels Bray, Benjamin Risk prediction of 30-day mortality after stroke using machine learning: a nationwide registry-based cohort study |
title | Risk prediction of 30-day mortality after stroke using machine learning: a nationwide registry-based cohort study |
title_full | Risk prediction of 30-day mortality after stroke using machine learning: a nationwide registry-based cohort study |
title_fullStr | Risk prediction of 30-day mortality after stroke using machine learning: a nationwide registry-based cohort study |
title_full_unstemmed | Risk prediction of 30-day mortality after stroke using machine learning: a nationwide registry-based cohort study |
title_short | Risk prediction of 30-day mortality after stroke using machine learning: a nationwide registry-based cohort study |
title_sort | risk prediction of 30-day mortality after stroke using machine learning: a nationwide registry-based cohort study |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9137068/ https://www.ncbi.nlm.nih.gov/pubmed/35624434 http://dx.doi.org/10.1186/s12883-022-02722-1 |
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