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IRimage: open source software for processing images from infrared thermal cameras

IRimage aims at increasing throughput, accuracy and reproducibility of results obtained from thermal images, especially those produced with affordable, consumer-oriented cameras. IRimage processes thermal images, extracting raw data and calculating temperature values with an open and fully documente...

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Detalles Bibliográficos
Autor principal: Pereyra Irujo, Gustavo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9138121/
https://www.ncbi.nlm.nih.gov/pubmed/35634096
http://dx.doi.org/10.7717/peerj-cs.977
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author Pereyra Irujo, Gustavo
author_facet Pereyra Irujo, Gustavo
author_sort Pereyra Irujo, Gustavo
collection PubMed
description IRimage aims at increasing throughput, accuracy and reproducibility of results obtained from thermal images, especially those produced with affordable, consumer-oriented cameras. IRimage processes thermal images, extracting raw data and calculating temperature values with an open and fully documented algorithm, making this data available for further processing using image analysis software. It also allows the making of reproducible measurements of the temperature of objects in a series of images, and produce visual outputs (images and videos) suitable for scientific reporting. IRimage is implemented in a scripting language of the scientific image analysis software ImageJ, allowing its use through a graphical user interface and also allowing for an easy modification or expansion of its functionality. IRimage’s results were consistent with those of standard software for 15 camera models of the most widely used brand. An example use case is also presented, in which IRimage was used to efficiently process hundreds of thermal images to reveal subtle differences in the daily pattern of leaf temperature of plants subjected to different soil water contents. IRimage’s functionalities make it better suited for research purposes than many currently available alternatives, and could contribute to making affordable consumer-grade thermal cameras useful for reproducible research.
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spelling pubmed-91381212022-05-28 IRimage: open source software for processing images from infrared thermal cameras Pereyra Irujo, Gustavo PeerJ Comput Sci Bioinformatics IRimage aims at increasing throughput, accuracy and reproducibility of results obtained from thermal images, especially those produced with affordable, consumer-oriented cameras. IRimage processes thermal images, extracting raw data and calculating temperature values with an open and fully documented algorithm, making this data available for further processing using image analysis software. It also allows the making of reproducible measurements of the temperature of objects in a series of images, and produce visual outputs (images and videos) suitable for scientific reporting. IRimage is implemented in a scripting language of the scientific image analysis software ImageJ, allowing its use through a graphical user interface and also allowing for an easy modification or expansion of its functionality. IRimage’s results were consistent with those of standard software for 15 camera models of the most widely used brand. An example use case is also presented, in which IRimage was used to efficiently process hundreds of thermal images to reveal subtle differences in the daily pattern of leaf temperature of plants subjected to different soil water contents. IRimage’s functionalities make it better suited for research purposes than many currently available alternatives, and could contribute to making affordable consumer-grade thermal cameras useful for reproducible research. PeerJ Inc. 2022-05-10 /pmc/articles/PMC9138121/ /pubmed/35634096 http://dx.doi.org/10.7717/peerj-cs.977 Text en ©2022 Pereyra Irujo https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Pereyra Irujo, Gustavo
IRimage: open source software for processing images from infrared thermal cameras
title IRimage: open source software for processing images from infrared thermal cameras
title_full IRimage: open source software for processing images from infrared thermal cameras
title_fullStr IRimage: open source software for processing images from infrared thermal cameras
title_full_unstemmed IRimage: open source software for processing images from infrared thermal cameras
title_short IRimage: open source software for processing images from infrared thermal cameras
title_sort irimage: open source software for processing images from infrared thermal cameras
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9138121/
https://www.ncbi.nlm.nih.gov/pubmed/35634096
http://dx.doi.org/10.7717/peerj-cs.977
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