Cargando…

The Brain Research Hotspot Database (BRHD): A Panoramic Database of the Latest Hotspots in Brain Research

Brain science, an emerging, dynamic, multidisciplinary basic research field, is generating numerous valuable data. However, there are still several obstacles for the utilization of these data, such as data fragmentation, heterogeneity, availability, and annotation divergence. Thus, to overcome these...

Descripción completa

Detalles Bibliográficos
Autores principales: Chen, Pin, Lin, Xue, Liu, Anna, Li, Jian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9139690/
https://www.ncbi.nlm.nih.gov/pubmed/35625024
http://dx.doi.org/10.3390/brainsci12050638
_version_ 1784714917488623616
author Chen, Pin
Lin, Xue
Liu, Anna
Li, Jian
author_facet Chen, Pin
Lin, Xue
Liu, Anna
Li, Jian
author_sort Chen, Pin
collection PubMed
description Brain science, an emerging, dynamic, multidisciplinary basic research field, is generating numerous valuable data. However, there are still several obstacles for the utilization of these data, such as data fragmentation, heterogeneity, availability, and annotation divergence. Thus, to overcome these obstacles and construct an online community, we developed a panoramic database named Brain Research Hotspot Database (BRHD). As of 30 January 2022, the database had been integrated with standardized vocabularies from various resources, including 423,681 papers, 46,344 patents, 9585 transcriptomic datasets, 261 cell markers, as well as with information regarding brain initiatives that were officially launched and well-known scholars in brain research. Based on the keywords entered by users and the search options they set, data can be accessed and retrieved through exact and fuzzy search scenarios. In addition, for brain diseases, we developed three featured functions based on deep data mining: (1) a brain disease–genome network, which collects the associations between common brain diseases, genes, and mutations reported in the literature; (2) brain and gut microbiome associations, based on the literature related to this topic, with added annotations for reference; (3) 3D brain structure, containing a high-precision brain anatomy model with visual links to quickly connect to an organ-on-a-chip database. In short, the BRHD integrates data from a variety of brain science resources to provide a friendly user interface and freely accessible viewing and downloading environment. Furthermore, the original functions developed based on these data provide references and insights for brain research.
format Online
Article
Text
id pubmed-9139690
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-91396902022-05-28 The Brain Research Hotspot Database (BRHD): A Panoramic Database of the Latest Hotspots in Brain Research Chen, Pin Lin, Xue Liu, Anna Li, Jian Brain Sci Article Brain science, an emerging, dynamic, multidisciplinary basic research field, is generating numerous valuable data. However, there are still several obstacles for the utilization of these data, such as data fragmentation, heterogeneity, availability, and annotation divergence. Thus, to overcome these obstacles and construct an online community, we developed a panoramic database named Brain Research Hotspot Database (BRHD). As of 30 January 2022, the database had been integrated with standardized vocabularies from various resources, including 423,681 papers, 46,344 patents, 9585 transcriptomic datasets, 261 cell markers, as well as with information regarding brain initiatives that were officially launched and well-known scholars in brain research. Based on the keywords entered by users and the search options they set, data can be accessed and retrieved through exact and fuzzy search scenarios. In addition, for brain diseases, we developed three featured functions based on deep data mining: (1) a brain disease–genome network, which collects the associations between common brain diseases, genes, and mutations reported in the literature; (2) brain and gut microbiome associations, based on the literature related to this topic, with added annotations for reference; (3) 3D brain structure, containing a high-precision brain anatomy model with visual links to quickly connect to an organ-on-a-chip database. In short, the BRHD integrates data from a variety of brain science resources to provide a friendly user interface and freely accessible viewing and downloading environment. Furthermore, the original functions developed based on these data provide references and insights for brain research. MDPI 2022-05-12 /pmc/articles/PMC9139690/ /pubmed/35625024 http://dx.doi.org/10.3390/brainsci12050638 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Chen, Pin
Lin, Xue
Liu, Anna
Li, Jian
The Brain Research Hotspot Database (BRHD): A Panoramic Database of the Latest Hotspots in Brain Research
title The Brain Research Hotspot Database (BRHD): A Panoramic Database of the Latest Hotspots in Brain Research
title_full The Brain Research Hotspot Database (BRHD): A Panoramic Database of the Latest Hotspots in Brain Research
title_fullStr The Brain Research Hotspot Database (BRHD): A Panoramic Database of the Latest Hotspots in Brain Research
title_full_unstemmed The Brain Research Hotspot Database (BRHD): A Panoramic Database of the Latest Hotspots in Brain Research
title_short The Brain Research Hotspot Database (BRHD): A Panoramic Database of the Latest Hotspots in Brain Research
title_sort brain research hotspot database (brhd): a panoramic database of the latest hotspots in brain research
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9139690/
https://www.ncbi.nlm.nih.gov/pubmed/35625024
http://dx.doi.org/10.3390/brainsci12050638
work_keys_str_mv AT chenpin thebrainresearchhotspotdatabasebrhdapanoramicdatabaseofthelatesthotspotsinbrainresearch
AT linxue thebrainresearchhotspotdatabasebrhdapanoramicdatabaseofthelatesthotspotsinbrainresearch
AT liuanna thebrainresearchhotspotdatabasebrhdapanoramicdatabaseofthelatesthotspotsinbrainresearch
AT lijian thebrainresearchhotspotdatabasebrhdapanoramicdatabaseofthelatesthotspotsinbrainresearch
AT chenpin brainresearchhotspotdatabasebrhdapanoramicdatabaseofthelatesthotspotsinbrainresearch
AT linxue brainresearchhotspotdatabasebrhdapanoramicdatabaseofthelatesthotspotsinbrainresearch
AT liuanna brainresearchhotspotdatabasebrhdapanoramicdatabaseofthelatesthotspotsinbrainresearch
AT lijian brainresearchhotspotdatabasebrhdapanoramicdatabaseofthelatesthotspotsinbrainresearch