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Discovering sparse control strategies in neural activity

Biological circuits such as neural or gene regulation networks use internal states to map sensory input to an adaptive repertoire of behavior. Characterizing this mapping is a major challenge for systems biology. Though experiments that probe internal states are developing rapidly, organismal comple...

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Detalles Bibliográficos
Autores principales: Lee, Edward D., Chen, Xiaowen, Daniels, Bryan C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9140285/
https://www.ncbi.nlm.nih.gov/pubmed/35622828
http://dx.doi.org/10.1371/journal.pcbi.1010072
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author Lee, Edward D.
Chen, Xiaowen
Daniels, Bryan C.
author_facet Lee, Edward D.
Chen, Xiaowen
Daniels, Bryan C.
author_sort Lee, Edward D.
collection PubMed
description Biological circuits such as neural or gene regulation networks use internal states to map sensory input to an adaptive repertoire of behavior. Characterizing this mapping is a major challenge for systems biology. Though experiments that probe internal states are developing rapidly, organismal complexity presents a fundamental obstacle given the many possible ways internal states could map to behavior. Using C. elegans as an example, we propose a protocol for systematic perturbation of neural states that limits experimental complexity and could eventually help characterize collective aspects of the neural-behavioral map. We consider experimentally motivated small perturbations—ones that are most likely to preserve natural dynamics and are closer to internal control mechanisms—to neural states and their impact on collective neural activity. Then, we connect such perturbations to the local information geometry of collective statistics, which can be fully characterized using pairwise perturbations. Applying the protocol to a minimal model of C. elegans neural activity, we find that collective neural statistics are most sensitive to a few principal perturbative modes. Dominant eigenvalues decay initially as a power law, unveiling a hierarchy that arises from variation in individual neural activity and pairwise interactions. Highest-ranking modes tend to be dominated by a few, “pivotal” neurons that account for most of the system’s sensitivity, suggesting a sparse mechanism of collective control.
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spelling pubmed-91402852022-05-28 Discovering sparse control strategies in neural activity Lee, Edward D. Chen, Xiaowen Daniels, Bryan C. PLoS Comput Biol Research Article Biological circuits such as neural or gene regulation networks use internal states to map sensory input to an adaptive repertoire of behavior. Characterizing this mapping is a major challenge for systems biology. Though experiments that probe internal states are developing rapidly, organismal complexity presents a fundamental obstacle given the many possible ways internal states could map to behavior. Using C. elegans as an example, we propose a protocol for systematic perturbation of neural states that limits experimental complexity and could eventually help characterize collective aspects of the neural-behavioral map. We consider experimentally motivated small perturbations—ones that are most likely to preserve natural dynamics and are closer to internal control mechanisms—to neural states and their impact on collective neural activity. Then, we connect such perturbations to the local information geometry of collective statistics, which can be fully characterized using pairwise perturbations. Applying the protocol to a minimal model of C. elegans neural activity, we find that collective neural statistics are most sensitive to a few principal perturbative modes. Dominant eigenvalues decay initially as a power law, unveiling a hierarchy that arises from variation in individual neural activity and pairwise interactions. Highest-ranking modes tend to be dominated by a few, “pivotal” neurons that account for most of the system’s sensitivity, suggesting a sparse mechanism of collective control. Public Library of Science 2022-05-27 /pmc/articles/PMC9140285/ /pubmed/35622828 http://dx.doi.org/10.1371/journal.pcbi.1010072 Text en © 2022 Lee et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Lee, Edward D.
Chen, Xiaowen
Daniels, Bryan C.
Discovering sparse control strategies in neural activity
title Discovering sparse control strategies in neural activity
title_full Discovering sparse control strategies in neural activity
title_fullStr Discovering sparse control strategies in neural activity
title_full_unstemmed Discovering sparse control strategies in neural activity
title_short Discovering sparse control strategies in neural activity
title_sort discovering sparse control strategies in neural activity
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9140285/
https://www.ncbi.nlm.nih.gov/pubmed/35622828
http://dx.doi.org/10.1371/journal.pcbi.1010072
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