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Optimal Population Coding for Dynamic Input by Nonequilibrium Networks
The efficient coding hypothesis states that neural response should maximize its information about the external input. Theoretical studies focus on optimal response in single neuron and population code in networks with weak pairwise interactions. However, more biological settings with asymmetric conn...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9140425/ https://www.ncbi.nlm.nih.gov/pubmed/35626482 http://dx.doi.org/10.3390/e24050598 |
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author | Chen, Kevin S. |
author_facet | Chen, Kevin S. |
author_sort | Chen, Kevin S. |
collection | PubMed |
description | The efficient coding hypothesis states that neural response should maximize its information about the external input. Theoretical studies focus on optimal response in single neuron and population code in networks with weak pairwise interactions. However, more biological settings with asymmetric connectivity and the encoding for dynamical stimuli have not been well-characterized. Here, we study the collective response in a kinetic Ising model that encodes the dynamic input. We apply gradient-based method and mean-field approximation to reconstruct networks given the neural code that encodes dynamic input patterns. We measure network asymmetry, decoding performance, and entropy production from networks that generate optimal population code. We analyze how stimulus correlation, time scale, and reliability of the network affect optimal encoding networks. Specifically, we find network dynamics altered by statistics of the dynamic input, identify stimulus encoding strategies, and show optimal effective temperature in the asymmetric networks. We further discuss how this approach connects to the Bayesian framework and continuous recurrent neural networks. Together, these results bridge concepts of nonequilibrium physics with the analyses of dynamics and coding in networks. |
format | Online Article Text |
id | pubmed-9140425 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-91404252022-05-28 Optimal Population Coding for Dynamic Input by Nonequilibrium Networks Chen, Kevin S. Entropy (Basel) Article The efficient coding hypothesis states that neural response should maximize its information about the external input. Theoretical studies focus on optimal response in single neuron and population code in networks with weak pairwise interactions. However, more biological settings with asymmetric connectivity and the encoding for dynamical stimuli have not been well-characterized. Here, we study the collective response in a kinetic Ising model that encodes the dynamic input. We apply gradient-based method and mean-field approximation to reconstruct networks given the neural code that encodes dynamic input patterns. We measure network asymmetry, decoding performance, and entropy production from networks that generate optimal population code. We analyze how stimulus correlation, time scale, and reliability of the network affect optimal encoding networks. Specifically, we find network dynamics altered by statistics of the dynamic input, identify stimulus encoding strategies, and show optimal effective temperature in the asymmetric networks. We further discuss how this approach connects to the Bayesian framework and continuous recurrent neural networks. Together, these results bridge concepts of nonequilibrium physics with the analyses of dynamics and coding in networks. MDPI 2022-04-25 /pmc/articles/PMC9140425/ /pubmed/35626482 http://dx.doi.org/10.3390/e24050598 Text en © 2022 by the author. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Chen, Kevin S. Optimal Population Coding for Dynamic Input by Nonequilibrium Networks |
title | Optimal Population Coding for Dynamic Input by Nonequilibrium Networks |
title_full | Optimal Population Coding for Dynamic Input by Nonequilibrium Networks |
title_fullStr | Optimal Population Coding for Dynamic Input by Nonequilibrium Networks |
title_full_unstemmed | Optimal Population Coding for Dynamic Input by Nonequilibrium Networks |
title_short | Optimal Population Coding for Dynamic Input by Nonequilibrium Networks |
title_sort | optimal population coding for dynamic input by nonequilibrium networks |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9140425/ https://www.ncbi.nlm.nih.gov/pubmed/35626482 http://dx.doi.org/10.3390/e24050598 |
work_keys_str_mv | AT chenkevins optimalpopulationcodingfordynamicinputbynonequilibriumnetworks |