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Pitaya Genome and Multiomics Database (PGMD): A Comprehensive and Integrative Resource of Selenicereus undatus

Pitaya (Selenicereus) is a kind of novel fruit with a delicious taste and superior horticulture ornamental value. The potential economic impact of the pitaya lies in its diverse uses not only as agricultural produce and processed foods but also in industrial and medicinal products. It is also an exc...

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Detalles Bibliográficos
Autores principales: Chen, Canbin, Li, Fangping, Xie, Fangfang, Chen, Jiaxuan, Hua, Qingzhu, Chen, Jianye, Wu, Zhijiang, Zhang, Zhike, Zhang, Rong, Zhao, Jietang, Hu, Guibing, Qin, Yonghua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9140478/
https://www.ncbi.nlm.nih.gov/pubmed/35627130
http://dx.doi.org/10.3390/genes13050745
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author Chen, Canbin
Li, Fangping
Xie, Fangfang
Chen, Jiaxuan
Hua, Qingzhu
Chen, Jianye
Wu, Zhijiang
Zhang, Zhike
Zhang, Rong
Zhao, Jietang
Hu, Guibing
Qin, Yonghua
author_facet Chen, Canbin
Li, Fangping
Xie, Fangfang
Chen, Jiaxuan
Hua, Qingzhu
Chen, Jianye
Wu, Zhijiang
Zhang, Zhike
Zhang, Rong
Zhao, Jietang
Hu, Guibing
Qin, Yonghua
author_sort Chen, Canbin
collection PubMed
description Pitaya (Selenicereus) is a kind of novel fruit with a delicious taste and superior horticulture ornamental value. The potential economic impact of the pitaya lies in its diverse uses not only as agricultural produce and processed foods but also in industrial and medicinal products. It is also an excellent plant material for basic and applied biological research. A comprehensive database of pitaya would facilitate studies of pitaya and the other Cactaceae plant species. Here, we constructed pitaya genome and multiomics database, which is a collection of the most updated and high-quality pitaya genomic assemblies. The database contains various information such as genomic variation, gene expression, miRNA profiles, metabolite and proteomic data from various tissues and fruit developmental stages of different pitaya cultivars. In PGMD, we also uploaded videos on the flowering process and planting tutorials for practical usage of pitaya. Overall, these valuable data provided in the PGMD will significantly facilitate future studies on population genetics, molecular breeding and function research of pitaya.
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spelling pubmed-91404782022-05-28 Pitaya Genome and Multiomics Database (PGMD): A Comprehensive and Integrative Resource of Selenicereus undatus Chen, Canbin Li, Fangping Xie, Fangfang Chen, Jiaxuan Hua, Qingzhu Chen, Jianye Wu, Zhijiang Zhang, Zhike Zhang, Rong Zhao, Jietang Hu, Guibing Qin, Yonghua Genes (Basel) Article Pitaya (Selenicereus) is a kind of novel fruit with a delicious taste and superior horticulture ornamental value. The potential economic impact of the pitaya lies in its diverse uses not only as agricultural produce and processed foods but also in industrial and medicinal products. It is also an excellent plant material for basic and applied biological research. A comprehensive database of pitaya would facilitate studies of pitaya and the other Cactaceae plant species. Here, we constructed pitaya genome and multiomics database, which is a collection of the most updated and high-quality pitaya genomic assemblies. The database contains various information such as genomic variation, gene expression, miRNA profiles, metabolite and proteomic data from various tissues and fruit developmental stages of different pitaya cultivars. In PGMD, we also uploaded videos on the flowering process and planting tutorials for practical usage of pitaya. Overall, these valuable data provided in the PGMD will significantly facilitate future studies on population genetics, molecular breeding and function research of pitaya. MDPI 2022-04-24 /pmc/articles/PMC9140478/ /pubmed/35627130 http://dx.doi.org/10.3390/genes13050745 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Chen, Canbin
Li, Fangping
Xie, Fangfang
Chen, Jiaxuan
Hua, Qingzhu
Chen, Jianye
Wu, Zhijiang
Zhang, Zhike
Zhang, Rong
Zhao, Jietang
Hu, Guibing
Qin, Yonghua
Pitaya Genome and Multiomics Database (PGMD): A Comprehensive and Integrative Resource of Selenicereus undatus
title Pitaya Genome and Multiomics Database (PGMD): A Comprehensive and Integrative Resource of Selenicereus undatus
title_full Pitaya Genome and Multiomics Database (PGMD): A Comprehensive and Integrative Resource of Selenicereus undatus
title_fullStr Pitaya Genome and Multiomics Database (PGMD): A Comprehensive and Integrative Resource of Selenicereus undatus
title_full_unstemmed Pitaya Genome and Multiomics Database (PGMD): A Comprehensive and Integrative Resource of Selenicereus undatus
title_short Pitaya Genome and Multiomics Database (PGMD): A Comprehensive and Integrative Resource of Selenicereus undatus
title_sort pitaya genome and multiomics database (pgmd): a comprehensive and integrative resource of selenicereus undatus
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9140478/
https://www.ncbi.nlm.nih.gov/pubmed/35627130
http://dx.doi.org/10.3390/genes13050745
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