Cargando…

Sequence Analysis of the Complete Mitochondrial Genome of a Medicinal Plant, Vitex rotundifolia Linnaeus f. (Lamiales: Lamiaceae)

In the present study, we depicted the complete mitochondrial genome of a valuable medicinal plant, Vitex rotundifolia. The mitochondrial genome of V. rotundifolia, mapped as a circular molecule, spanned 380,980 bp in length and had a GC content of 45.54%. The complete genome contained 38 protein-cod...

Descripción completa

Detalles Bibliográficos
Autores principales: Yu, Xiaoli, Duan, Zhonggang, Wang, Yanjun, Zhang, Qingxin, Li, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9140901/
https://www.ncbi.nlm.nih.gov/pubmed/35627224
http://dx.doi.org/10.3390/genes13050839
_version_ 1784715212790693888
author Yu, Xiaoli
Duan, Zhonggang
Wang, Yanjun
Zhang, Qingxin
Li, Wei
author_facet Yu, Xiaoli
Duan, Zhonggang
Wang, Yanjun
Zhang, Qingxin
Li, Wei
author_sort Yu, Xiaoli
collection PubMed
description In the present study, we depicted the complete mitochondrial genome of a valuable medicinal plant, Vitex rotundifolia. The mitochondrial genome of V. rotundifolia, mapped as a circular molecule, spanned 380,980 bp in length and had a GC content of 45.54%. The complete genome contained 38 protein-coding genes, 19 transfer RNAs (tRNAs), and 3 ribosomal RNAs (rRNAs). We found that there were only 38.73% (147.54 kb), 36.28% (138.23 kb), and 52.22% (198.96 kb) of the homologous sequences in the mitochondrial genome of V. rotundifolia, as compared with the mitochondrial genomes of Scutellaria tsinyunensis, Boea hygrometrica, and Erythranthe lutea, respectively. A multipartite structure mediated by the homologous recombinations of the three direct repeats was found in the V. rotundifolia mitochondrial genome. The phylogenetic tree was built based on 10 species of Lamiales, using the maximum likelihood method. Moreover, this phylogenetic analysis is the first to present the evolutionary relationship of V. rotundifolia with the other species in Lamiales, based on the complete mitochondrial genome.
format Online
Article
Text
id pubmed-9140901
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-91409012022-05-28 Sequence Analysis of the Complete Mitochondrial Genome of a Medicinal Plant, Vitex rotundifolia Linnaeus f. (Lamiales: Lamiaceae) Yu, Xiaoli Duan, Zhonggang Wang, Yanjun Zhang, Qingxin Li, Wei Genes (Basel) Article In the present study, we depicted the complete mitochondrial genome of a valuable medicinal plant, Vitex rotundifolia. The mitochondrial genome of V. rotundifolia, mapped as a circular molecule, spanned 380,980 bp in length and had a GC content of 45.54%. The complete genome contained 38 protein-coding genes, 19 transfer RNAs (tRNAs), and 3 ribosomal RNAs (rRNAs). We found that there were only 38.73% (147.54 kb), 36.28% (138.23 kb), and 52.22% (198.96 kb) of the homologous sequences in the mitochondrial genome of V. rotundifolia, as compared with the mitochondrial genomes of Scutellaria tsinyunensis, Boea hygrometrica, and Erythranthe lutea, respectively. A multipartite structure mediated by the homologous recombinations of the three direct repeats was found in the V. rotundifolia mitochondrial genome. The phylogenetic tree was built based on 10 species of Lamiales, using the maximum likelihood method. Moreover, this phylogenetic analysis is the first to present the evolutionary relationship of V. rotundifolia with the other species in Lamiales, based on the complete mitochondrial genome. MDPI 2022-05-08 /pmc/articles/PMC9140901/ /pubmed/35627224 http://dx.doi.org/10.3390/genes13050839 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Yu, Xiaoli
Duan, Zhonggang
Wang, Yanjun
Zhang, Qingxin
Li, Wei
Sequence Analysis of the Complete Mitochondrial Genome of a Medicinal Plant, Vitex rotundifolia Linnaeus f. (Lamiales: Lamiaceae)
title Sequence Analysis of the Complete Mitochondrial Genome of a Medicinal Plant, Vitex rotundifolia Linnaeus f. (Lamiales: Lamiaceae)
title_full Sequence Analysis of the Complete Mitochondrial Genome of a Medicinal Plant, Vitex rotundifolia Linnaeus f. (Lamiales: Lamiaceae)
title_fullStr Sequence Analysis of the Complete Mitochondrial Genome of a Medicinal Plant, Vitex rotundifolia Linnaeus f. (Lamiales: Lamiaceae)
title_full_unstemmed Sequence Analysis of the Complete Mitochondrial Genome of a Medicinal Plant, Vitex rotundifolia Linnaeus f. (Lamiales: Lamiaceae)
title_short Sequence Analysis of the Complete Mitochondrial Genome of a Medicinal Plant, Vitex rotundifolia Linnaeus f. (Lamiales: Lamiaceae)
title_sort sequence analysis of the complete mitochondrial genome of a medicinal plant, vitex rotundifolia linnaeus f. (lamiales: lamiaceae)
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9140901/
https://www.ncbi.nlm.nih.gov/pubmed/35627224
http://dx.doi.org/10.3390/genes13050839
work_keys_str_mv AT yuxiaoli sequenceanalysisofthecompletemitochondrialgenomeofamedicinalplantvitexrotundifolialinnaeusflamialeslamiaceae
AT duanzhonggang sequenceanalysisofthecompletemitochondrialgenomeofamedicinalplantvitexrotundifolialinnaeusflamialeslamiaceae
AT wangyanjun sequenceanalysisofthecompletemitochondrialgenomeofamedicinalplantvitexrotundifolialinnaeusflamialeslamiaceae
AT zhangqingxin sequenceanalysisofthecompletemitochondrialgenomeofamedicinalplantvitexrotundifolialinnaeusflamialeslamiaceae
AT liwei sequenceanalysisofthecompletemitochondrialgenomeofamedicinalplantvitexrotundifolialinnaeusflamialeslamiaceae