Cargando…
Sequence Analysis of the Complete Mitochondrial Genome of a Medicinal Plant, Vitex rotundifolia Linnaeus f. (Lamiales: Lamiaceae)
In the present study, we depicted the complete mitochondrial genome of a valuable medicinal plant, Vitex rotundifolia. The mitochondrial genome of V. rotundifolia, mapped as a circular molecule, spanned 380,980 bp in length and had a GC content of 45.54%. The complete genome contained 38 protein-cod...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9140901/ https://www.ncbi.nlm.nih.gov/pubmed/35627224 http://dx.doi.org/10.3390/genes13050839 |
_version_ | 1784715212790693888 |
---|---|
author | Yu, Xiaoli Duan, Zhonggang Wang, Yanjun Zhang, Qingxin Li, Wei |
author_facet | Yu, Xiaoli Duan, Zhonggang Wang, Yanjun Zhang, Qingxin Li, Wei |
author_sort | Yu, Xiaoli |
collection | PubMed |
description | In the present study, we depicted the complete mitochondrial genome of a valuable medicinal plant, Vitex rotundifolia. The mitochondrial genome of V. rotundifolia, mapped as a circular molecule, spanned 380,980 bp in length and had a GC content of 45.54%. The complete genome contained 38 protein-coding genes, 19 transfer RNAs (tRNAs), and 3 ribosomal RNAs (rRNAs). We found that there were only 38.73% (147.54 kb), 36.28% (138.23 kb), and 52.22% (198.96 kb) of the homologous sequences in the mitochondrial genome of V. rotundifolia, as compared with the mitochondrial genomes of Scutellaria tsinyunensis, Boea hygrometrica, and Erythranthe lutea, respectively. A multipartite structure mediated by the homologous recombinations of the three direct repeats was found in the V. rotundifolia mitochondrial genome. The phylogenetic tree was built based on 10 species of Lamiales, using the maximum likelihood method. Moreover, this phylogenetic analysis is the first to present the evolutionary relationship of V. rotundifolia with the other species in Lamiales, based on the complete mitochondrial genome. |
format | Online Article Text |
id | pubmed-9140901 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-91409012022-05-28 Sequence Analysis of the Complete Mitochondrial Genome of a Medicinal Plant, Vitex rotundifolia Linnaeus f. (Lamiales: Lamiaceae) Yu, Xiaoli Duan, Zhonggang Wang, Yanjun Zhang, Qingxin Li, Wei Genes (Basel) Article In the present study, we depicted the complete mitochondrial genome of a valuable medicinal plant, Vitex rotundifolia. The mitochondrial genome of V. rotundifolia, mapped as a circular molecule, spanned 380,980 bp in length and had a GC content of 45.54%. The complete genome contained 38 protein-coding genes, 19 transfer RNAs (tRNAs), and 3 ribosomal RNAs (rRNAs). We found that there were only 38.73% (147.54 kb), 36.28% (138.23 kb), and 52.22% (198.96 kb) of the homologous sequences in the mitochondrial genome of V. rotundifolia, as compared with the mitochondrial genomes of Scutellaria tsinyunensis, Boea hygrometrica, and Erythranthe lutea, respectively. A multipartite structure mediated by the homologous recombinations of the three direct repeats was found in the V. rotundifolia mitochondrial genome. The phylogenetic tree was built based on 10 species of Lamiales, using the maximum likelihood method. Moreover, this phylogenetic analysis is the first to present the evolutionary relationship of V. rotundifolia with the other species in Lamiales, based on the complete mitochondrial genome. MDPI 2022-05-08 /pmc/articles/PMC9140901/ /pubmed/35627224 http://dx.doi.org/10.3390/genes13050839 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Yu, Xiaoli Duan, Zhonggang Wang, Yanjun Zhang, Qingxin Li, Wei Sequence Analysis of the Complete Mitochondrial Genome of a Medicinal Plant, Vitex rotundifolia Linnaeus f. (Lamiales: Lamiaceae) |
title | Sequence Analysis of the Complete Mitochondrial Genome of a Medicinal Plant, Vitex rotundifolia Linnaeus f. (Lamiales: Lamiaceae) |
title_full | Sequence Analysis of the Complete Mitochondrial Genome of a Medicinal Plant, Vitex rotundifolia Linnaeus f. (Lamiales: Lamiaceae) |
title_fullStr | Sequence Analysis of the Complete Mitochondrial Genome of a Medicinal Plant, Vitex rotundifolia Linnaeus f. (Lamiales: Lamiaceae) |
title_full_unstemmed | Sequence Analysis of the Complete Mitochondrial Genome of a Medicinal Plant, Vitex rotundifolia Linnaeus f. (Lamiales: Lamiaceae) |
title_short | Sequence Analysis of the Complete Mitochondrial Genome of a Medicinal Plant, Vitex rotundifolia Linnaeus f. (Lamiales: Lamiaceae) |
title_sort | sequence analysis of the complete mitochondrial genome of a medicinal plant, vitex rotundifolia linnaeus f. (lamiales: lamiaceae) |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9140901/ https://www.ncbi.nlm.nih.gov/pubmed/35627224 http://dx.doi.org/10.3390/genes13050839 |
work_keys_str_mv | AT yuxiaoli sequenceanalysisofthecompletemitochondrialgenomeofamedicinalplantvitexrotundifolialinnaeusflamialeslamiaceae AT duanzhonggang sequenceanalysisofthecompletemitochondrialgenomeofamedicinalplantvitexrotundifolialinnaeusflamialeslamiaceae AT wangyanjun sequenceanalysisofthecompletemitochondrialgenomeofamedicinalplantvitexrotundifolialinnaeusflamialeslamiaceae AT zhangqingxin sequenceanalysisofthecompletemitochondrialgenomeofamedicinalplantvitexrotundifolialinnaeusflamialeslamiaceae AT liwei sequenceanalysisofthecompletemitochondrialgenomeofamedicinalplantvitexrotundifolialinnaeusflamialeslamiaceae |