Cargando…
A Risk Model of Eight Immune-Related Genes Predicting Prognostic Response to Immune Therapies for Gastric Cancer
Immune checkpoint inhibitor (ICI) treatment is considered as an innovative approach for cancers. Since not every patient responded well to ICI therapy, it is imperative to screen out novel signatures to predict prognosis. Based on 407 gastric cancer (GC) samples retrieved from The Cancer Genome Atla...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9141964/ https://www.ncbi.nlm.nih.gov/pubmed/35627105 http://dx.doi.org/10.3390/genes13050720 |
_version_ | 1784715471412527104 |
---|---|
author | Yu, Miao Zhang, Yi Mao, Rongchen Zhu, Chao Zhao, Ruixue Jin, Lai |
author_facet | Yu, Miao Zhang, Yi Mao, Rongchen Zhu, Chao Zhao, Ruixue Jin, Lai |
author_sort | Yu, Miao |
collection | PubMed |
description | Immune checkpoint inhibitor (ICI) treatment is considered as an innovative approach for cancers. Since not every patient responded well to ICI therapy, it is imperative to screen out novel signatures to predict prognosis. Based on 407 gastric cancer (GC) samples retrieved from The Cancer Genome Atlas (TCGA), 36 immune-related hub genes were identified by weighted gene co-expression network analysis (WGCNA), and eight of them (RNASE2, CGB5, INHBE, DUSP1, APOA1, CD36, PTGER3, CTLA4) were used to formulate the Cox regression model. The obtained risk score was proven to be significantly correlated with overall survival (OS), consistent with the consequence of the Gene Expression Omnibus (GEO) cohort (n = 433). Then, the relationship between the risk score and clinical, molecular and immune characteristics was further investigated. Results showed that the low-risk subgroup exhibited higher mutation rate, more M1 macrophages, CD8(+) and CD4(+) T cells infiltrating, more active MHC-I, and bias to “IFN-γ Dominant” immune type, which is consistent with our current understanding of tumor prognostic risk. Furthermore, it is suggested that our model can accurately predict 1-, 2-, and 3-year OS of GC patients, and that it was superior to other canonical models, such as TIDE and TIS. Thus, these eight genes are probably considered as potential signatures to predict prognosis and to distinguish patient benefit from ICI, serving as a guiding individualized immunotherapy. |
format | Online Article Text |
id | pubmed-9141964 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-91419642022-05-28 A Risk Model of Eight Immune-Related Genes Predicting Prognostic Response to Immune Therapies for Gastric Cancer Yu, Miao Zhang, Yi Mao, Rongchen Zhu, Chao Zhao, Ruixue Jin, Lai Genes (Basel) Article Immune checkpoint inhibitor (ICI) treatment is considered as an innovative approach for cancers. Since not every patient responded well to ICI therapy, it is imperative to screen out novel signatures to predict prognosis. Based on 407 gastric cancer (GC) samples retrieved from The Cancer Genome Atlas (TCGA), 36 immune-related hub genes were identified by weighted gene co-expression network analysis (WGCNA), and eight of them (RNASE2, CGB5, INHBE, DUSP1, APOA1, CD36, PTGER3, CTLA4) were used to formulate the Cox regression model. The obtained risk score was proven to be significantly correlated with overall survival (OS), consistent with the consequence of the Gene Expression Omnibus (GEO) cohort (n = 433). Then, the relationship between the risk score and clinical, molecular and immune characteristics was further investigated. Results showed that the low-risk subgroup exhibited higher mutation rate, more M1 macrophages, CD8(+) and CD4(+) T cells infiltrating, more active MHC-I, and bias to “IFN-γ Dominant” immune type, which is consistent with our current understanding of tumor prognostic risk. Furthermore, it is suggested that our model can accurately predict 1-, 2-, and 3-year OS of GC patients, and that it was superior to other canonical models, such as TIDE and TIS. Thus, these eight genes are probably considered as potential signatures to predict prognosis and to distinguish patient benefit from ICI, serving as a guiding individualized immunotherapy. MDPI 2022-04-20 /pmc/articles/PMC9141964/ /pubmed/35627105 http://dx.doi.org/10.3390/genes13050720 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Yu, Miao Zhang, Yi Mao, Rongchen Zhu, Chao Zhao, Ruixue Jin, Lai A Risk Model of Eight Immune-Related Genes Predicting Prognostic Response to Immune Therapies for Gastric Cancer |
title | A Risk Model of Eight Immune-Related Genes Predicting Prognostic Response to Immune Therapies for Gastric Cancer |
title_full | A Risk Model of Eight Immune-Related Genes Predicting Prognostic Response to Immune Therapies for Gastric Cancer |
title_fullStr | A Risk Model of Eight Immune-Related Genes Predicting Prognostic Response to Immune Therapies for Gastric Cancer |
title_full_unstemmed | A Risk Model of Eight Immune-Related Genes Predicting Prognostic Response to Immune Therapies for Gastric Cancer |
title_short | A Risk Model of Eight Immune-Related Genes Predicting Prognostic Response to Immune Therapies for Gastric Cancer |
title_sort | risk model of eight immune-related genes predicting prognostic response to immune therapies for gastric cancer |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9141964/ https://www.ncbi.nlm.nih.gov/pubmed/35627105 http://dx.doi.org/10.3390/genes13050720 |
work_keys_str_mv | AT yumiao ariskmodelofeightimmunerelatedgenespredictingprognosticresponsetoimmunetherapiesforgastriccancer AT zhangyi ariskmodelofeightimmunerelatedgenespredictingprognosticresponsetoimmunetherapiesforgastriccancer AT maorongchen ariskmodelofeightimmunerelatedgenespredictingprognosticresponsetoimmunetherapiesforgastriccancer AT zhuchao ariskmodelofeightimmunerelatedgenespredictingprognosticresponsetoimmunetherapiesforgastriccancer AT zhaoruixue ariskmodelofeightimmunerelatedgenespredictingprognosticresponsetoimmunetherapiesforgastriccancer AT jinlai ariskmodelofeightimmunerelatedgenespredictingprognosticresponsetoimmunetherapiesforgastriccancer AT yumiao riskmodelofeightimmunerelatedgenespredictingprognosticresponsetoimmunetherapiesforgastriccancer AT zhangyi riskmodelofeightimmunerelatedgenespredictingprognosticresponsetoimmunetherapiesforgastriccancer AT maorongchen riskmodelofeightimmunerelatedgenespredictingprognosticresponsetoimmunetherapiesforgastriccancer AT zhuchao riskmodelofeightimmunerelatedgenespredictingprognosticresponsetoimmunetherapiesforgastriccancer AT zhaoruixue riskmodelofeightimmunerelatedgenespredictingprognosticresponsetoimmunetherapiesforgastriccancer AT jinlai riskmodelofeightimmunerelatedgenespredictingprognosticresponsetoimmunetherapiesforgastriccancer |