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A deep learning segmentation-classification pipeline for X-ray-based COVID-19 diagnosis

Over the past year, the AI community has constructed several deep learning models for diagnosing COVID-19 based on the visual features of chest X-rays. While deep learning researchers have commonly focused much of their attention on designing deep learning classifiers, only a fraction of these same...

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Detalles Bibliográficos
Autores principales: Hertel, Robert, Benlamri, Rachid
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Authors. Published by Elsevier Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9142180/
https://www.ncbi.nlm.nih.gov/pubmed/35663366
http://dx.doi.org/10.1016/j.bea.2022.100041
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author Hertel, Robert
Benlamri, Rachid
author_facet Hertel, Robert
Benlamri, Rachid
author_sort Hertel, Robert
collection PubMed
description Over the past year, the AI community has constructed several deep learning models for diagnosing COVID-19 based on the visual features of chest X-rays. While deep learning researchers have commonly focused much of their attention on designing deep learning classifiers, only a fraction of these same researchers have dedicated effort to including a segmentation module in their system. This is unfortunate since other applications in radiology typically require segmentation as a necessary prerequisite step in building truly deployable clinical models. Differentiating COVID-19 from other pulmonary diseases can be challenging as various lung diseases share common visual features with COVID-19. To help clarify the diagnosis of suspected COVID-19 patients, we have designed our deep learning pipeline with a segmentation module and ensemble classifier. Following a detailed description of our deep learning pipeline, we present the strengths and shortcomings of our approach and compare our model with other similarly constructed models. While doing so, we focus our attention on widely circulated public datasets and describe several fallacies we have noticed in the literature concerning them. After performing a thorough comparative analysis, we demonstrate that our best model can successfully obtain an accuracy of 91 percent and sensitivity of 92 percent.
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spelling pubmed-91421802022-05-31 A deep learning segmentation-classification pipeline for X-ray-based COVID-19 diagnosis Hertel, Robert Benlamri, Rachid Biomed Eng Adv Article Over the past year, the AI community has constructed several deep learning models for diagnosing COVID-19 based on the visual features of chest X-rays. While deep learning researchers have commonly focused much of their attention on designing deep learning classifiers, only a fraction of these same researchers have dedicated effort to including a segmentation module in their system. This is unfortunate since other applications in radiology typically require segmentation as a necessary prerequisite step in building truly deployable clinical models. Differentiating COVID-19 from other pulmonary diseases can be challenging as various lung diseases share common visual features with COVID-19. To help clarify the diagnosis of suspected COVID-19 patients, we have designed our deep learning pipeline with a segmentation module and ensemble classifier. Following a detailed description of our deep learning pipeline, we present the strengths and shortcomings of our approach and compare our model with other similarly constructed models. While doing so, we focus our attention on widely circulated public datasets and describe several fallacies we have noticed in the literature concerning them. After performing a thorough comparative analysis, we demonstrate that our best model can successfully obtain an accuracy of 91 percent and sensitivity of 92 percent. The Authors. Published by Elsevier Inc. 2022-06 2022-05-28 /pmc/articles/PMC9142180/ /pubmed/35663366 http://dx.doi.org/10.1016/j.bea.2022.100041 Text en © 2022 The Authors Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Hertel, Robert
Benlamri, Rachid
A deep learning segmentation-classification pipeline for X-ray-based COVID-19 diagnosis
title A deep learning segmentation-classification pipeline for X-ray-based COVID-19 diagnosis
title_full A deep learning segmentation-classification pipeline for X-ray-based COVID-19 diagnosis
title_fullStr A deep learning segmentation-classification pipeline for X-ray-based COVID-19 diagnosis
title_full_unstemmed A deep learning segmentation-classification pipeline for X-ray-based COVID-19 diagnosis
title_short A deep learning segmentation-classification pipeline for X-ray-based COVID-19 diagnosis
title_sort deep learning segmentation-classification pipeline for x-ray-based covid-19 diagnosis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9142180/
https://www.ncbi.nlm.nih.gov/pubmed/35663366
http://dx.doi.org/10.1016/j.bea.2022.100041
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