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The Bootstrap Model of Prebiotic Networks of Proteins and Nucleic Acids

It is not known how life arose from prebiotic physical chemistry. How did fruitful cell-like associations emerge from the two polymer types—informational (nucleic acids, xNAs = DNA or RNA) and functional (proteins)? Our model shows how functional networks could bootstrap from random sequence-indepen...

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Autores principales: Farquharson, Thomas, Agozzino, Luca, Dill, Ken
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9144896/
https://www.ncbi.nlm.nih.gov/pubmed/35629391
http://dx.doi.org/10.3390/life12050724
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author Farquharson, Thomas
Agozzino, Luca
Dill, Ken
author_facet Farquharson, Thomas
Agozzino, Luca
Dill, Ken
author_sort Farquharson, Thomas
collection PubMed
description It is not known how life arose from prebiotic physical chemistry. How did fruitful cell-like associations emerge from the two polymer types—informational (nucleic acids, xNAs = DNA or RNA) and functional (proteins)? Our model shows how functional networks could bootstrap from random sequence-independent initial states. For proteins, we adopt the foldamer hypothesis: through persistent nonequilibrium prebiotic syntheses, short random peptides fold and catalyze the elongation of others. The xNAs enter through random binding to the peptides, and all chains can mutate. Chains grow inside colloids that split when they’re large, coupling faster growth speeds to bigger populations. Random and useless at first, these folding and binding events grow protein—xNA networks that resemble today’s protein–protein networks.
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spelling pubmed-91448962022-05-29 The Bootstrap Model of Prebiotic Networks of Proteins and Nucleic Acids Farquharson, Thomas Agozzino, Luca Dill, Ken Life (Basel) Article It is not known how life arose from prebiotic physical chemistry. How did fruitful cell-like associations emerge from the two polymer types—informational (nucleic acids, xNAs = DNA or RNA) and functional (proteins)? Our model shows how functional networks could bootstrap from random sequence-independent initial states. For proteins, we adopt the foldamer hypothesis: through persistent nonequilibrium prebiotic syntheses, short random peptides fold and catalyze the elongation of others. The xNAs enter through random binding to the peptides, and all chains can mutate. Chains grow inside colloids that split when they’re large, coupling faster growth speeds to bigger populations. Random and useless at first, these folding and binding events grow protein—xNA networks that resemble today’s protein–protein networks. MDPI 2022-05-12 /pmc/articles/PMC9144896/ /pubmed/35629391 http://dx.doi.org/10.3390/life12050724 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Farquharson, Thomas
Agozzino, Luca
Dill, Ken
The Bootstrap Model of Prebiotic Networks of Proteins and Nucleic Acids
title The Bootstrap Model of Prebiotic Networks of Proteins and Nucleic Acids
title_full The Bootstrap Model of Prebiotic Networks of Proteins and Nucleic Acids
title_fullStr The Bootstrap Model of Prebiotic Networks of Proteins and Nucleic Acids
title_full_unstemmed The Bootstrap Model of Prebiotic Networks of Proteins and Nucleic Acids
title_short The Bootstrap Model of Prebiotic Networks of Proteins and Nucleic Acids
title_sort bootstrap model of prebiotic networks of proteins and nucleic acids
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9144896/
https://www.ncbi.nlm.nih.gov/pubmed/35629391
http://dx.doi.org/10.3390/life12050724
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