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Data Collection for Dilute Protein Solutions via a Neutron Backscattering Spectrometer

Understanding protein functions requires not only static but also dynamic structural information. Incoherent quasi-elastic neutron scattering (QENS), which utilizes the highly incoherent scattering ability of hydrogen, is a powerful technique for revealing the dynamics of proteins in deuterium oxide...

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Autores principales: Tominaga, Taiki, Nakagawa, Hiroshi, Sahara, Masae, Oda, Takashi, Inoue, Rintaro, Sugiyama, Masaaki
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9145923/
https://www.ncbi.nlm.nih.gov/pubmed/35629343
http://dx.doi.org/10.3390/life12050675
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author Tominaga, Taiki
Nakagawa, Hiroshi
Sahara, Masae
Oda, Takashi
Inoue, Rintaro
Sugiyama, Masaaki
author_facet Tominaga, Taiki
Nakagawa, Hiroshi
Sahara, Masae
Oda, Takashi
Inoue, Rintaro
Sugiyama, Masaaki
author_sort Tominaga, Taiki
collection PubMed
description Understanding protein functions requires not only static but also dynamic structural information. Incoherent quasi-elastic neutron scattering (QENS), which utilizes the highly incoherent scattering ability of hydrogen, is a powerful technique for revealing the dynamics of proteins in deuterium oxide (D(2)O) buffer solutions. The background scattering of sample cells suitable for aqueous protein solution samples, conducted with a neutron backscattering spectrometer, was evaluated. It was found that the scattering intensity of an aluminum sample cell coated with boehmite using D(2)O was lower than that of a sample cell coated with regular water (H(2)O). The D(2)O-Boehmite coated cell was used for the QENS measurement of a 0.8 wt.% aqueous solution of an intrinsically disordered protein in an intrinsically disordered region of a helicase-associated endonuclease for a fork-structured type of DNA. The cell was inert against aqueous samples at 283–363 K. In addition, meticulous attention to cells with small individual weight differences and the positional reproducibility of the sample cell relative to the spectrometer neutron beam position enabled the accurate subtraction of the scattering profiles of the D(2)O buffer and the sample container. Consequently, high-quality information on protein dynamics could be extracted from dilute protein solutions.
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spelling pubmed-91459232022-05-29 Data Collection for Dilute Protein Solutions via a Neutron Backscattering Spectrometer Tominaga, Taiki Nakagawa, Hiroshi Sahara, Masae Oda, Takashi Inoue, Rintaro Sugiyama, Masaaki Life (Basel) Article Understanding protein functions requires not only static but also dynamic structural information. Incoherent quasi-elastic neutron scattering (QENS), which utilizes the highly incoherent scattering ability of hydrogen, is a powerful technique for revealing the dynamics of proteins in deuterium oxide (D(2)O) buffer solutions. The background scattering of sample cells suitable for aqueous protein solution samples, conducted with a neutron backscattering spectrometer, was evaluated. It was found that the scattering intensity of an aluminum sample cell coated with boehmite using D(2)O was lower than that of a sample cell coated with regular water (H(2)O). The D(2)O-Boehmite coated cell was used for the QENS measurement of a 0.8 wt.% aqueous solution of an intrinsically disordered protein in an intrinsically disordered region of a helicase-associated endonuclease for a fork-structured type of DNA. The cell was inert against aqueous samples at 283–363 K. In addition, meticulous attention to cells with small individual weight differences and the positional reproducibility of the sample cell relative to the spectrometer neutron beam position enabled the accurate subtraction of the scattering profiles of the D(2)O buffer and the sample container. Consequently, high-quality information on protein dynamics could be extracted from dilute protein solutions. MDPI 2022-05-02 /pmc/articles/PMC9145923/ /pubmed/35629343 http://dx.doi.org/10.3390/life12050675 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Tominaga, Taiki
Nakagawa, Hiroshi
Sahara, Masae
Oda, Takashi
Inoue, Rintaro
Sugiyama, Masaaki
Data Collection for Dilute Protein Solutions via a Neutron Backscattering Spectrometer
title Data Collection for Dilute Protein Solutions via a Neutron Backscattering Spectrometer
title_full Data Collection for Dilute Protein Solutions via a Neutron Backscattering Spectrometer
title_fullStr Data Collection for Dilute Protein Solutions via a Neutron Backscattering Spectrometer
title_full_unstemmed Data Collection for Dilute Protein Solutions via a Neutron Backscattering Spectrometer
title_short Data Collection for Dilute Protein Solutions via a Neutron Backscattering Spectrometer
title_sort data collection for dilute protein solutions via a neutron backscattering spectrometer
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9145923/
https://www.ncbi.nlm.nih.gov/pubmed/35629343
http://dx.doi.org/10.3390/life12050675
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