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Schistoscope: An Automated Microscope with Artificial Intelligence for Detection of Schistosoma haematobium Eggs in Resource-Limited Settings

For many parasitic diseases, the microscopic examination of clinical samples such as urine and stool still serves as the diagnostic reference standard, primarily because microscopes are accessible and cost-effective. However, conventional microscopy is laborious, requires highly skilled personnel, a...

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Autores principales: Oyibo, Prosper, Jujjavarapu, Satyajith, Meulah, Brice, Agbana, Tope, Braakman, Ingeborg, van Diepen, Angela, Bengtson, Michel, van Lieshout, Lisette, Oyibo, Wellington, Vdovine, Gleb, Diehl, Jan-Carel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9146062/
https://www.ncbi.nlm.nih.gov/pubmed/35630110
http://dx.doi.org/10.3390/mi13050643
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author Oyibo, Prosper
Jujjavarapu, Satyajith
Meulah, Brice
Agbana, Tope
Braakman, Ingeborg
van Diepen, Angela
Bengtson, Michel
van Lieshout, Lisette
Oyibo, Wellington
Vdovine, Gleb
Diehl, Jan-Carel
author_facet Oyibo, Prosper
Jujjavarapu, Satyajith
Meulah, Brice
Agbana, Tope
Braakman, Ingeborg
van Diepen, Angela
Bengtson, Michel
van Lieshout, Lisette
Oyibo, Wellington
Vdovine, Gleb
Diehl, Jan-Carel
author_sort Oyibo, Prosper
collection PubMed
description For many parasitic diseases, the microscopic examination of clinical samples such as urine and stool still serves as the diagnostic reference standard, primarily because microscopes are accessible and cost-effective. However, conventional microscopy is laborious, requires highly skilled personnel, and is highly subjective. Requirements for skilled operators, coupled with the cost and maintenance needs of the microscopes, which is hardly done in endemic countries, presents grossly limited access to the diagnosis of parasitic diseases in resource-limited settings. The urgent requirement for the management of tropical diseases such as schistosomiasis, which is now focused on elimination, has underscored the critical need for the creation of access to easy-to-use diagnosis for case detection, community mapping, and surveillance. In this paper, we present a low-cost automated digital microscope—the Schistoscope—which is capable of automatic focusing and scanning regions of interest in prepared microscope slides, and automatic detection of Schistosoma haematobium eggs in captured images. The device was developed using widely accessible distributed manufacturing methods and off-the-shelf components to enable local manufacturability and ease of maintenance. For proof of principle, we created a Schistosoma haematobium egg dataset of over 5000 images captured from spiked and clinical urine samples from field settings and demonstrated the automatic detection of Schistosoma haematobium eggs using a trained deep neural network model. The experiments and results presented in this paper collectively illustrate the robustness, stability, and optical performance of the device, making it suitable for use in the monitoring and evaluation of schistosomiasis control programs in endemic settings.
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spelling pubmed-91460622022-05-29 Schistoscope: An Automated Microscope with Artificial Intelligence for Detection of Schistosoma haematobium Eggs in Resource-Limited Settings Oyibo, Prosper Jujjavarapu, Satyajith Meulah, Brice Agbana, Tope Braakman, Ingeborg van Diepen, Angela Bengtson, Michel van Lieshout, Lisette Oyibo, Wellington Vdovine, Gleb Diehl, Jan-Carel Micromachines (Basel) Article For many parasitic diseases, the microscopic examination of clinical samples such as urine and stool still serves as the diagnostic reference standard, primarily because microscopes are accessible and cost-effective. However, conventional microscopy is laborious, requires highly skilled personnel, and is highly subjective. Requirements for skilled operators, coupled with the cost and maintenance needs of the microscopes, which is hardly done in endemic countries, presents grossly limited access to the diagnosis of parasitic diseases in resource-limited settings. The urgent requirement for the management of tropical diseases such as schistosomiasis, which is now focused on elimination, has underscored the critical need for the creation of access to easy-to-use diagnosis for case detection, community mapping, and surveillance. In this paper, we present a low-cost automated digital microscope—the Schistoscope—which is capable of automatic focusing and scanning regions of interest in prepared microscope slides, and automatic detection of Schistosoma haematobium eggs in captured images. The device was developed using widely accessible distributed manufacturing methods and off-the-shelf components to enable local manufacturability and ease of maintenance. For proof of principle, we created a Schistosoma haematobium egg dataset of over 5000 images captured from spiked and clinical urine samples from field settings and demonstrated the automatic detection of Schistosoma haematobium eggs using a trained deep neural network model. The experiments and results presented in this paper collectively illustrate the robustness, stability, and optical performance of the device, making it suitable for use in the monitoring and evaluation of schistosomiasis control programs in endemic settings. MDPI 2022-04-19 /pmc/articles/PMC9146062/ /pubmed/35630110 http://dx.doi.org/10.3390/mi13050643 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Oyibo, Prosper
Jujjavarapu, Satyajith
Meulah, Brice
Agbana, Tope
Braakman, Ingeborg
van Diepen, Angela
Bengtson, Michel
van Lieshout, Lisette
Oyibo, Wellington
Vdovine, Gleb
Diehl, Jan-Carel
Schistoscope: An Automated Microscope with Artificial Intelligence for Detection of Schistosoma haematobium Eggs in Resource-Limited Settings
title Schistoscope: An Automated Microscope with Artificial Intelligence for Detection of Schistosoma haematobium Eggs in Resource-Limited Settings
title_full Schistoscope: An Automated Microscope with Artificial Intelligence for Detection of Schistosoma haematobium Eggs in Resource-Limited Settings
title_fullStr Schistoscope: An Automated Microscope with Artificial Intelligence for Detection of Schistosoma haematobium Eggs in Resource-Limited Settings
title_full_unstemmed Schistoscope: An Automated Microscope with Artificial Intelligence for Detection of Schistosoma haematobium Eggs in Resource-Limited Settings
title_short Schistoscope: An Automated Microscope with Artificial Intelligence for Detection of Schistosoma haematobium Eggs in Resource-Limited Settings
title_sort schistoscope: an automated microscope with artificial intelligence for detection of schistosoma haematobium eggs in resource-limited settings
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9146062/
https://www.ncbi.nlm.nih.gov/pubmed/35630110
http://dx.doi.org/10.3390/mi13050643
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