Cargando…

Exploring Nearest Neighbor Interactions and Their Influence on the Gibbs Energy Landscape of Unfolded Proteins and Peptides

The Flory isolated pair hypothesis (IPH) is one of the corner stones of the random coil model, which is generally invoked to describe the conformational dynamics of unfolded and intrinsically disordered proteins (IDPs). It stipulates, that individual residues sample the entire sterically allowed spa...

Descripción completa

Detalles Bibliográficos
Autor principal:	Schweitzer-Stenner, Reinhard
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2022
Materias:	Review
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9147007/ https://www.ncbi.nlm.nih.gov/pubmed/35628453 http://dx.doi.org/10.3390/ijms23105643

Ejemplares similares

Local Order in the Unfolded State: Conformational Biases and Nearest Neighbor Interactions
por: Toal, Siobhan, et al.
Publicado: (2014)

Randomizing of Oligopeptide Conformations by Nearest Neighbor Interactions between Amino Acid Residues
por: Schweitzer-Stenner, Reinhard, et al.
Publicado: (2022)

Nearest-Neighbor Interactions and Their Influence on the Structural Aspects of Dipeptides
por: Das, Gunajyoti, et al.
Publicado: (2013)

Kinetic Models for Topological Nearest-Neighbor Interactions
por: Blanchet, Adrien, et al.
Publicado: (2017)

Lectures on the nearest neighbor method
por: Biau, Gérard, et al.
Publicado: (2015)

Dimensionality reduction with unsupervised nearest neighbors
por: Kramer, Oliver
Publicado: (2013)

Energy Parameters and Novel Algorithms for an Extended Nearest Neighbor Energy Model of RNA
por: Dotu, Ivan, et al.
Publicado: (2014)

Deep Regression of Muon Energy with a K-Nearest Neighbor Algorithm
por: Dorigo, Tommaso, et al.
Publicado: (2022)

Nearest-neighbor classifier as a tool for classification of protein families
por: Chaurasiya, Mona, et al.
Publicado: (2010)

Accumulative Quantization for Approximate Nearest Neighbor Search
por: Ai, Liefu, et al.
Publicado: (2022)

RIsearch: fast RNA–RNA interaction search using a simplified nearest-neighbor energy model
por: Wenzel, Anne, et al.
Publicado: (2012)

Reverse Nearest Neighbor Search on a Protein-Protein Interaction Network to Infer Protein-Disease Associations
por: Suratanee, Apichat, et al.
Publicado: (2017)

Quasi-One-Dimensional Linarite-Type PbCu(SeO(4))(OH)(2) with Competing Nearest-Neighbor and Next-Nearest-Neighbor Intrachain Exchange Interactions
por: Markina, Maria, et al.
Publicado: (2022)

A Scalable Algorithm to Explore the Gibbs Energy Landscape of Genome-Scale Metabolic Networks
por: De Martino, Daniele, et al.
Publicado: (2012)

Nearest neighbor search on embeddings rapidly identifies distant protein relations
por: Schütze, Konstantin, et al.
Publicado: (2022)

Nearest-neighbor thermodynamics of deoxyinosine pairs in DNA duplexes
por: Watkins, Norman E., et al.
Publicado: (2005)

Approximate Nearest Neighbor Search by Residual Vector Quantization
por: Chen, Yongjian, et al.
Publicado: (2010)

Secure Nearest Neighbor Query on Crowd-Sensing Data
por: Cheng, Ke, et al.
Publicado: (2016)

A Privacy Preserving Scheme for Nearest Neighbor Query
por: Wang, Yuhang, et al.
Publicado: (2018)

Nearest neighbor imputation algorithms: a critical evaluation
por: Beretta, Lorenzo, et al.
Publicado: (2016)

Gravity-Matching Algorithm Based on K-Nearest Neighbor
por: Gao, Shuaipeng, et al.
Publicado: (2022)

DrTransformer: heuristic cotranscriptional RNA folding using the nearest neighbor energy model
por: Badelt, Stefan, et al.
Publicado: (2023)

Heme–Protein Interactions and Functional Relevant Heme Deformations: The Cytochrome c Case
por: Schweitzer-Stenner, Reinhard
Publicado: (2022)

Alpha centauri: unveiling the secrets of our nearest stellar neighbor
por: Beech, Martin
Publicado: (2015)

Nearest neighbors reveal fast and slow components of motor learning
por: Kollmorgen, Sepp, et al.
Publicado: (2020)

Compressed kNN: K-Nearest Neighbors with Data Compression
por: Salvador–Meneses, Jaime, et al.
Publicado: (2019)

Predictions and analyses of RNA nearest neighbor parameters for modified nucleotides
por: Hopfinger, Melissa C, et al.
Publicado: (2020)

Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction
por: Doshi, Kishore J, et al.
Publicado: (2004)

DTI-SNNFRA: Drug-target interaction prediction by shared nearest neighbors and fuzzy-rough approximation
por: Islam, Sk Mazharul, et al.
Publicado: (2021)

Nearest Neighbor Networks: clustering expression data based on gene neighborhoods
por: Huttenhower, Curtis, et al.
Publicado: (2007)

The effects of mismatches on hybridization in DNA microarrays: determination of nearest neighbor parameters
por: Hooyberghs, J., et al.
Publicado: (2009)

Fast GPU Nearest Neighbors search algorithms for the CMS experiment at LHC
por: Degano, Alessandro
Publicado: (2018)

Using K-Nearest Neighbor Classification to Diagnose Abnormal Lung Sounds
por: Chen, Chin-Hsing, et al.
Publicado: (2015)

Distance-Constraint k-Nearest Neighbor Searching in Mobile Sensor Networks
por: Han, Yongkoo, et al.
Publicado: (2015)

The distance function effect on k-nearest neighbor classification for medical datasets
por: Hu, Li-Yu, et al.
Publicado: (2016)

Nearest Neighbor Decoding and Pilot-Aided Channel Estimation for Fading Channels †
por: Asyhari, A. Taufiq, et al.
Publicado: (2020)

Nearest-neighbor NMR spectroscopy: categorizing spectral peaks by their adjacent nuclei
por: Behera, Soumya P., et al.
Publicado: (2020)

Generating normal networks via leaf insertion and nearest neighbor interchange
por: Zhang, Louxin
Publicado: (2019)

The k conditional nearest neighbor algorithm for classification and class probability estimation
por: Gweon, Hyukjun, et al.
Publicado: (2019)

NNAN: Nearest Neighbor Attention Network to Predict Drug–Microbe Associations
por: Zhu, Bei, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_t14rf0ga6kvbs6on6v452819or