Cargando…

Influence of DNA extraction kits on freshwater fungal DNA metabarcoding

BACKGROUND: Environmental DNA (eDNA) metabarcoding is a common technique for efficient biodiversity monitoring, especially of microbes. Recently, the usefulness of aquatic eDNA in monitoring the diversity of both terrestrial and aquatic fungi has been suggested. In eDNA studies, different experiment...

Descripción completa

Detalles Bibliográficos
Autores principales:	Matsuoka, Shunsuke, Sugiyama, Yoriko, Nagano, Mariko, Doi, Hideyuki
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	PeerJ Inc. 2022
Materias:	Biodiversity
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9150701/ https://www.ncbi.nlm.nih.gov/pubmed/35651749 http://dx.doi.org/10.7717/peerj.13477

Ejemplares similares

Can non-destructive DNA extraction of bulk invertebrate samples be used for metabarcoding?
por: Carew, Melissa E., et al.
Publicado: (2018)

Unearthing soil arthropod diversity through DNA metabarcoding
por: Young, Monica R., et al.
Publicado: (2022)

Environmental DNA metabarcoding for fish community analysis in backwater lakes: A comparison of capture methods
por: Fujii, Kazuya, et al.
Publicado: (2019)

The effects of spatial and temporal replicate sampling on eDNA metabarcoding
por: Beentjes, Kevin K., et al.
Publicado: (2019)

Using DNA metabarcoding to assess insect diversity in citrus orchards
por: Liu, Chenxi, et al.
Publicado: (2023)

Testing the potential of a ribosomal 16S marker for DNA metabarcoding of insects
por: Elbrecht, Vasco, et al.
Publicado: (2016)

Monitoring newt communities in urban area using eDNA metabarcoding
por: Charvoz, Léo, et al.
Publicado: (2021)

Environmental DNA metabarcoding for monitoring metazoan biodiversity in Antarctic nearshore ecosystems
por: Clarke, Laurence J., et al.
Publicado: (2021)

Illumina iSeq 100 and MiSeq exhibit similar performance in freshwater fish environmental DNA metabarcoding
por: Nakao, Ryohei, et al.
Publicado: (2021)

Spatio-temporal monitoring of deep-sea communities using metabarcoding of sediment DNA and RNA
por: Guardiola, Magdalena, et al.
Publicado: (2016)

Culicidae-centric metabarcoding through targeted use of D2 ribosomal DNA primers
por: Pedro, Pedro M., et al.
Publicado: (2020)

Diversity and distribution of Symbiodiniaceae detected on coral reefs of Lombok, Indonesia using environmental DNA metabarcoding
por: Pratomo, Arief, et al.
Publicado: (2022)

DNA metabarcoding of zooplankton communities: species diversity and seasonal variation revealed by 18S rRNA and COI
por: Zhao, Lina, et al.
Publicado: (2021)

Grab what you can—an evaluation of spatial replication to decrease heterogeneity in sediment eDNA metabarcoding
por: Hestetun, Jon T., et al.
Publicado: (2021)

Systematic review of marine environmental DNA metabarcoding studies: toward best practices for data usability and accessibility
por: Shea, Meghan M., et al.
Publicado: (2023)

DNA metabarcoding of littoral hard-bottom communities: high diversity and database gaps revealed by two molecular markers
por: Wangensteen, Owen S., et al.
Publicado: (2018)

DNA metabarcoding allows non-invasive identification of arthropod prey provisioned to nestling Rufous hummingbirds (Selasphorus rufus)
por: Moran, Alison J., et al.
Publicado: (2019)

Usefulness and limitations of sample pooling for environmental DNA metabarcoding of freshwater fish communities
por: Sato, Hirotoshi, et al.
Publicado: (2017)

DNA metabarcoding reveals that coyotes in New York City consume wide variety of native prey species and human food
por: Henger, Carol S., et al.
Publicado: (2022)

Digging for DNA at depth: rapid universal metabarcoding surveys (RUMS) as a tool to detect coral reef biodiversity across a depth gradient
por: DiBattista, Joseph D., et al.
Publicado: (2019)

A highly diverse fungal community associated with leaves of the mangrove plant Acanthus ilicifolius var. xiamenensis revealed by isolation and metabarcoding analyses
por: Chi, Wei-Chiung, et al.
Publicado: (2019)

Uncovering unseen fungal diversity from plant DNA banks
por: Datlof, Erin M., et al.
Publicado: (2017)

Simultaneous preservation of the DNA quality, the community composition and the density of freshwater oligochaetes for the development of genetically based biological indices
por: Vivien, Régis, et al.
Publicado: (2018)

Oomycete metabarcoding reveals the presence of Lagenidium spp. in phytotelmata
por: Leoro-Garzon, Paula, et al.
Publicado: (2019)

Metabarcoding of the phytotelmata of Pseudalcantarea grandis (Bromeliaceae) from an arid zone
por: Herrera-García, José Alan, et al.
Publicado: (2022)

A bright idea—metabarcoding arthropods from light fixtures
por: Elbrecht, Vasco, et al.
Publicado: (2021)

Integrating eDNA and citizen science observations to model distribution of a temperate freshwater turtle near its northern range limit
por: Feng, Wenxi, et al.
Publicado: (2023)

THAPBI PICT—a fast, cautious, and accurate metabarcoding analysis pipeline
por: Cock, Peter J. A., et al.
Publicado: (2023)

Biogeographic Patterns of Ectomycorrhizal Fungal Communities Associated With Castanopsis sieboldii Across the Japanese Archipelago
por: Matsuoka, Shunsuke, et al.
Publicado: (2019)

Pooling size sorted Malaise trap fractions to maximize taxon recovery with metabarcoding
por: Elbrecht, Vasco, et al.
Publicado: (2021)

Benthic invertebrates in Svalbard fjords—when metabarcoding does not outperform traditional biodiversity assessment
por: Willassen, Endre, et al.
Publicado: (2022)

Towards an in-depth characterization of Symbiodiniaceae in tropical giant clams via metabarcoding of pooled multi-gene amplicons
por: Pochon, Xavier, et al.
Publicado: (2019)

Longitudinal metabarcode analysis of karst bacterioplankton microbiomes provide evidence of epikarst to cave transport and community succession
por: Morse, Kendall V., et al.
Publicado: (2021)

Be positive: customized reference databases and new, local barcodes balance false taxonomic assignments in metabarcoding studies
por: Mugnai, Francesco, et al.
Publicado: (2023)

Persisting roadblocks in arthropod monitoring using non-destructive metabarcoding from collection media of passive traps
por: Sire, Lucas, et al.
Publicado: (2023)

The structure and diversity of freshwater diatom assemblages from Franz Josef Land Archipelago: a northern outpost for freshwater diatoms
por: Pla-Rabés, Sergi, et al.
Publicado: (2016)

Mitochondrial cytochrome c oxidase subunit I (COI) metabarcoding of Foraminifera communities using taxon-specific primers
por: Macher, Jan-Niklas, et al.
Publicado: (2022)

Development of the cephalopod-specific universal primer set and its application for the metabarcoding analysis of planktonic cephalopods in Korean waters
por: Kim, Eun-Bi, et al.
Publicado: (2019)

High-throughput metabarcoding reveals the effect of physicochemical soil properties on soil and litter biodiversity and community turnover across Amazonia
por: Ritter, Camila D., et al.
Publicado: (2018)

Diversity, spatial distribution and activity of fungi in freshwater ecosystems
por: Lepère, Cécile, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_94tg9n8u1suopg2i0us0lvtjj4