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Potential Use of Microbial Community Genomes in Various Dimensions of Agriculture Productivity and Its Management: A Review

Agricultural productivity is highly influenced by its associated microbial community. With advancements in omics technology, metagenomics is known to play a vital role in microbial world studies by unlocking the uncultured microbial populations present in the environment. Metagenomics is a diagnosti...

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Autores principales: Iquebal, Mir Asif, Jagannadham, Jaisri, Jaiswal, Sarika, Prabha, Ratna, Rai, Anil, Kumar, Dinesh
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9152772/
https://www.ncbi.nlm.nih.gov/pubmed/35655999
http://dx.doi.org/10.3389/fmicb.2022.708335
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author Iquebal, Mir Asif
Jagannadham, Jaisri
Jaiswal, Sarika
Prabha, Ratna
Rai, Anil
Kumar, Dinesh
author_facet Iquebal, Mir Asif
Jagannadham, Jaisri
Jaiswal, Sarika
Prabha, Ratna
Rai, Anil
Kumar, Dinesh
author_sort Iquebal, Mir Asif
collection PubMed
description Agricultural productivity is highly influenced by its associated microbial community. With advancements in omics technology, metagenomics is known to play a vital role in microbial world studies by unlocking the uncultured microbial populations present in the environment. Metagenomics is a diagnostic tool to target unique signature loci of plant and animal pathogens as well as beneficial microorganisms from samples. Here, we reviewed various aspects of metagenomics from experimental methods to techniques used for sequencing, as well as diversified computational resources, including databases and software tools. Exhaustive focus and study are conducted on the application of metagenomics in agriculture, deciphering various areas, including pathogen and plant disease identification, disease resistance breeding, plant pest control, weed management, abiotic stress management, post-harvest management, discoveries in agriculture, source of novel molecules/compounds, biosurfactants and natural product, identification of biosynthetic molecules, use in genetically modified crops, and antibiotic-resistant genes. Metagenomics-wide association studies study in agriculture on crop productivity rates, intercropping analysis, and agronomic field is analyzed. This article is the first of its comprehensive study and prospects from an agriculture perspective, focusing on a wider range of applications of metagenomics and its association studies.
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spelling pubmed-91527722022-06-01 Potential Use of Microbial Community Genomes in Various Dimensions of Agriculture Productivity and Its Management: A Review Iquebal, Mir Asif Jagannadham, Jaisri Jaiswal, Sarika Prabha, Ratna Rai, Anil Kumar, Dinesh Front Microbiol Microbiology Agricultural productivity is highly influenced by its associated microbial community. With advancements in omics technology, metagenomics is known to play a vital role in microbial world studies by unlocking the uncultured microbial populations present in the environment. Metagenomics is a diagnostic tool to target unique signature loci of plant and animal pathogens as well as beneficial microorganisms from samples. Here, we reviewed various aspects of metagenomics from experimental methods to techniques used for sequencing, as well as diversified computational resources, including databases and software tools. Exhaustive focus and study are conducted on the application of metagenomics in agriculture, deciphering various areas, including pathogen and plant disease identification, disease resistance breeding, plant pest control, weed management, abiotic stress management, post-harvest management, discoveries in agriculture, source of novel molecules/compounds, biosurfactants and natural product, identification of biosynthetic molecules, use in genetically modified crops, and antibiotic-resistant genes. Metagenomics-wide association studies study in agriculture on crop productivity rates, intercropping analysis, and agronomic field is analyzed. This article is the first of its comprehensive study and prospects from an agriculture perspective, focusing on a wider range of applications of metagenomics and its association studies. Frontiers Media S.A. 2022-05-17 /pmc/articles/PMC9152772/ /pubmed/35655999 http://dx.doi.org/10.3389/fmicb.2022.708335 Text en Copyright © 2022 Iquebal, Jagannadham, Jaiswal, Prabha, Rai and Kumar. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Iquebal, Mir Asif
Jagannadham, Jaisri
Jaiswal, Sarika
Prabha, Ratna
Rai, Anil
Kumar, Dinesh
Potential Use of Microbial Community Genomes in Various Dimensions of Agriculture Productivity and Its Management: A Review
title Potential Use of Microbial Community Genomes in Various Dimensions of Agriculture Productivity and Its Management: A Review
title_full Potential Use of Microbial Community Genomes in Various Dimensions of Agriculture Productivity and Its Management: A Review
title_fullStr Potential Use of Microbial Community Genomes in Various Dimensions of Agriculture Productivity and Its Management: A Review
title_full_unstemmed Potential Use of Microbial Community Genomes in Various Dimensions of Agriculture Productivity and Its Management: A Review
title_short Potential Use of Microbial Community Genomes in Various Dimensions of Agriculture Productivity and Its Management: A Review
title_sort potential use of microbial community genomes in various dimensions of agriculture productivity and its management: a review
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9152772/
https://www.ncbi.nlm.nih.gov/pubmed/35655999
http://dx.doi.org/10.3389/fmicb.2022.708335
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