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Data standardization of plant–pollinator interactions
BACKGROUND: Animal pollination is an important ecosystem function and service, ensuring both the integrity of natural systems and human well-being. Although many knowledge shortfalls remain, some high-quality data sets on biological interactions are now available. The development and adoption of sta...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9154084/ https://www.ncbi.nlm.nih.gov/pubmed/35639882 http://dx.doi.org/10.1093/gigascience/giac043 |
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author | Salim, José A Saraiva, Antonio M Zermoglio, Paula F Agostini, Kayna Wolowski, Marina Drucker, Debora P Soares, Filipi M Bergamo, Pedro J Varassin, Isabela G Freitas, Leandro Maués, Márcia M Rech, Andre R Veiga, Allan K Acosta, Andre L Araujo, Andréa C Nogueira, Anselmo Blochtein, Betina Freitas, Breno M Albertini, Bruno C Maia-Silva, Camila Nunes, Carlos E P Pires, Carmen S S dos Santos, Charles F Queiroz, Elisa P Cartolano, Etienne A de Oliveira, Favízia F Amorim, Felipe W Fontúrbel, Francisco E da Silva, Gleycon V Consolaro, Hélder Alves-dos-Santos, Isabel Machado, Isabel C Silva, Juliana S Aleixo, Kátia P Carvalheiro, Luísa G Rocca, Márcia A Pinheiro, Mardiore Hrncir, Michael Streher, Nathália S Ferreira, Patricia A de Albuquerque, Patricia M C Maruyama, Pietro K Borges, Rafael C Giannini, Tereza C Brito, Vinícius L G |
author_facet | Salim, José A Saraiva, Antonio M Zermoglio, Paula F Agostini, Kayna Wolowski, Marina Drucker, Debora P Soares, Filipi M Bergamo, Pedro J Varassin, Isabela G Freitas, Leandro Maués, Márcia M Rech, Andre R Veiga, Allan K Acosta, Andre L Araujo, Andréa C Nogueira, Anselmo Blochtein, Betina Freitas, Breno M Albertini, Bruno C Maia-Silva, Camila Nunes, Carlos E P Pires, Carmen S S dos Santos, Charles F Queiroz, Elisa P Cartolano, Etienne A de Oliveira, Favízia F Amorim, Felipe W Fontúrbel, Francisco E da Silva, Gleycon V Consolaro, Hélder Alves-dos-Santos, Isabel Machado, Isabel C Silva, Juliana S Aleixo, Kátia P Carvalheiro, Luísa G Rocca, Márcia A Pinheiro, Mardiore Hrncir, Michael Streher, Nathália S Ferreira, Patricia A de Albuquerque, Patricia M C Maruyama, Pietro K Borges, Rafael C Giannini, Tereza C Brito, Vinícius L G |
author_sort | Salim, José A |
collection | PubMed |
description | BACKGROUND: Animal pollination is an important ecosystem function and service, ensuring both the integrity of natural systems and human well-being. Although many knowledge shortfalls remain, some high-quality data sets on biological interactions are now available. The development and adoption of standards for biodiversity data and metadata has promoted great advances in biological data sharing and aggregation, supporting large-scale studies and science-based public policies. However, these standards are currently not suitable to fully support interaction data sharing. RESULTS: Here we present a vocabulary of terms and a data model for sharing plant–pollinator interactions data based on the Darwin Core standard. The vocabulary introduces 48 new terms targeting several aspects of plant–pollinator interactions and can be used to capture information from different approaches and scales. Additionally, we provide solutions for data serialization using RDF, XML, and DwC-Archives and recommendations of existing controlled vocabularies for some of the terms. Our contribution supports open access to standardized data on plant–pollinator interactions. CONCLUSIONS: The adoption of the vocabulary would facilitate data sharing to support studies ranging from the spatial and temporal distribution of interactions to the taxonomic, phenological, functional, and phylogenetic aspects of plant–pollinator interactions. We expect to fill data and knowledge gaps, thus further enabling scientific research on the ecology and evolution of plant–pollinator communities, biodiversity conservation, ecosystem services, and the development of public policies. The proposed data model is flexible and can be adapted for sharing other types of interactions data by developing discipline-specific vocabularies of terms. |
format | Online Article Text |
id | pubmed-9154084 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-91540842022-06-04 Data standardization of plant–pollinator interactions Salim, José A Saraiva, Antonio M Zermoglio, Paula F Agostini, Kayna Wolowski, Marina Drucker, Debora P Soares, Filipi M Bergamo, Pedro J Varassin, Isabela G Freitas, Leandro Maués, Márcia M Rech, Andre R Veiga, Allan K Acosta, Andre L Araujo, Andréa C Nogueira, Anselmo Blochtein, Betina Freitas, Breno M Albertini, Bruno C Maia-Silva, Camila Nunes, Carlos E P Pires, Carmen S S dos Santos, Charles F Queiroz, Elisa P Cartolano, Etienne A de Oliveira, Favízia F Amorim, Felipe W Fontúrbel, Francisco E da Silva, Gleycon V Consolaro, Hélder Alves-dos-Santos, Isabel Machado, Isabel C Silva, Juliana S Aleixo, Kátia P Carvalheiro, Luísa G Rocca, Márcia A Pinheiro, Mardiore Hrncir, Michael Streher, Nathália S Ferreira, Patricia A de Albuquerque, Patricia M C Maruyama, Pietro K Borges, Rafael C Giannini, Tereza C Brito, Vinícius L G Gigascience Review BACKGROUND: Animal pollination is an important ecosystem function and service, ensuring both the integrity of natural systems and human well-being. Although many knowledge shortfalls remain, some high-quality data sets on biological interactions are now available. The development and adoption of standards for biodiversity data and metadata has promoted great advances in biological data sharing and aggregation, supporting large-scale studies and science-based public policies. However, these standards are currently not suitable to fully support interaction data sharing. RESULTS: Here we present a vocabulary of terms and a data model for sharing plant–pollinator interactions data based on the Darwin Core standard. The vocabulary introduces 48 new terms targeting several aspects of plant–pollinator interactions and can be used to capture information from different approaches and scales. Additionally, we provide solutions for data serialization using RDF, XML, and DwC-Archives and recommendations of existing controlled vocabularies for some of the terms. Our contribution supports open access to standardized data on plant–pollinator interactions. CONCLUSIONS: The adoption of the vocabulary would facilitate data sharing to support studies ranging from the spatial and temporal distribution of interactions to the taxonomic, phenological, functional, and phylogenetic aspects of plant–pollinator interactions. We expect to fill data and knowledge gaps, thus further enabling scientific research on the ecology and evolution of plant–pollinator communities, biodiversity conservation, ecosystem services, and the development of public policies. The proposed data model is flexible and can be adapted for sharing other types of interactions data by developing discipline-specific vocabularies of terms. Oxford University Press 2022-05-26 /pmc/articles/PMC9154084/ /pubmed/35639882 http://dx.doi.org/10.1093/gigascience/giac043 Text en © The Author(s) 2022. Published by Oxford University Press GigaScience. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Review Salim, José A Saraiva, Antonio M Zermoglio, Paula F Agostini, Kayna Wolowski, Marina Drucker, Debora P Soares, Filipi M Bergamo, Pedro J Varassin, Isabela G Freitas, Leandro Maués, Márcia M Rech, Andre R Veiga, Allan K Acosta, Andre L Araujo, Andréa C Nogueira, Anselmo Blochtein, Betina Freitas, Breno M Albertini, Bruno C Maia-Silva, Camila Nunes, Carlos E P Pires, Carmen S S dos Santos, Charles F Queiroz, Elisa P Cartolano, Etienne A de Oliveira, Favízia F Amorim, Felipe W Fontúrbel, Francisco E da Silva, Gleycon V Consolaro, Hélder Alves-dos-Santos, Isabel Machado, Isabel C Silva, Juliana S Aleixo, Kátia P Carvalheiro, Luísa G Rocca, Márcia A Pinheiro, Mardiore Hrncir, Michael Streher, Nathália S Ferreira, Patricia A de Albuquerque, Patricia M C Maruyama, Pietro K Borges, Rafael C Giannini, Tereza C Brito, Vinícius L G Data standardization of plant–pollinator interactions |
title | Data standardization of plant–pollinator interactions |
title_full | Data standardization of plant–pollinator interactions |
title_fullStr | Data standardization of plant–pollinator interactions |
title_full_unstemmed | Data standardization of plant–pollinator interactions |
title_short | Data standardization of plant–pollinator interactions |
title_sort | data standardization of plant–pollinator interactions |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9154084/ https://www.ncbi.nlm.nih.gov/pubmed/35639882 http://dx.doi.org/10.1093/gigascience/giac043 |
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