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Data standardization of plant–pollinator interactions

BACKGROUND: Animal pollination is an important ecosystem function and service, ensuring both the integrity of natural systems and human well-being. Although many knowledge shortfalls remain, some high-quality data sets on biological interactions are now available. The development and adoption of sta...

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Autores principales: Salim, José A, Saraiva, Antonio M, Zermoglio, Paula F, Agostini, Kayna, Wolowski, Marina, Drucker, Debora P, Soares, Filipi M, Bergamo, Pedro J, Varassin, Isabela G, Freitas, Leandro, Maués, Márcia M, Rech, Andre R, Veiga, Allan K, Acosta, Andre L, Araujo, Andréa C, Nogueira, Anselmo, Blochtein, Betina, Freitas, Breno M, Albertini, Bruno C, Maia-Silva, Camila, Nunes, Carlos E P, Pires, Carmen S S, dos Santos, Charles F, Queiroz, Elisa P, Cartolano, Etienne A, de Oliveira, Favízia F, Amorim, Felipe W, Fontúrbel, Francisco E, da Silva, Gleycon V, Consolaro, Hélder, Alves-dos-Santos, Isabel, Machado, Isabel C, Silva, Juliana S, Aleixo, Kátia P, Carvalheiro, Luísa G, Rocca, Márcia A, Pinheiro, Mardiore, Hrncir, Michael, Streher, Nathália S, Ferreira, Patricia A, de Albuquerque, Patricia M C, Maruyama, Pietro K, Borges, Rafael C, Giannini, Tereza C, Brito, Vinícius L G
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9154084/
https://www.ncbi.nlm.nih.gov/pubmed/35639882
http://dx.doi.org/10.1093/gigascience/giac043
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author Salim, José A
Saraiva, Antonio M
Zermoglio, Paula F
Agostini, Kayna
Wolowski, Marina
Drucker, Debora P
Soares, Filipi M
Bergamo, Pedro J
Varassin, Isabela G
Freitas, Leandro
Maués, Márcia M
Rech, Andre R
Veiga, Allan K
Acosta, Andre L
Araujo, Andréa C
Nogueira, Anselmo
Blochtein, Betina
Freitas, Breno M
Albertini, Bruno C
Maia-Silva, Camila
Nunes, Carlos E P
Pires, Carmen S S
dos Santos, Charles F
Queiroz, Elisa P
Cartolano, Etienne A
de Oliveira, Favízia F
Amorim, Felipe W
Fontúrbel, Francisco E
da Silva, Gleycon V
Consolaro, Hélder
Alves-dos-Santos, Isabel
Machado, Isabel C
Silva, Juliana S
Aleixo, Kátia P
Carvalheiro, Luísa G
Rocca, Márcia A
Pinheiro, Mardiore
Hrncir, Michael
Streher, Nathália S
Ferreira, Patricia A
de Albuquerque, Patricia M C
Maruyama, Pietro K
Borges, Rafael C
Giannini, Tereza C
Brito, Vinícius L G
author_facet Salim, José A
Saraiva, Antonio M
Zermoglio, Paula F
Agostini, Kayna
Wolowski, Marina
Drucker, Debora P
Soares, Filipi M
Bergamo, Pedro J
Varassin, Isabela G
Freitas, Leandro
Maués, Márcia M
Rech, Andre R
Veiga, Allan K
Acosta, Andre L
Araujo, Andréa C
Nogueira, Anselmo
Blochtein, Betina
Freitas, Breno M
Albertini, Bruno C
Maia-Silva, Camila
Nunes, Carlos E P
Pires, Carmen S S
dos Santos, Charles F
Queiroz, Elisa P
Cartolano, Etienne A
de Oliveira, Favízia F
Amorim, Felipe W
Fontúrbel, Francisco E
da Silva, Gleycon V
Consolaro, Hélder
Alves-dos-Santos, Isabel
Machado, Isabel C
Silva, Juliana S
Aleixo, Kátia P
Carvalheiro, Luísa G
Rocca, Márcia A
Pinheiro, Mardiore
Hrncir, Michael
Streher, Nathália S
Ferreira, Patricia A
de Albuquerque, Patricia M C
Maruyama, Pietro K
Borges, Rafael C
Giannini, Tereza C
Brito, Vinícius L G
author_sort Salim, José A
collection PubMed
description BACKGROUND: Animal pollination is an important ecosystem function and service, ensuring both the integrity of natural systems and human well-being. Although many knowledge shortfalls remain, some high-quality data sets on biological interactions are now available. The development and adoption of standards for biodiversity data and metadata has promoted great advances in biological data sharing and aggregation, supporting large-scale studies and science-based public policies. However, these standards are currently not suitable to fully support interaction data sharing. RESULTS: Here we present a vocabulary of terms and a data model for sharing plant–pollinator interactions data based on the Darwin Core standard. The vocabulary introduces 48 new terms targeting several aspects of plant–pollinator interactions and can be used to capture information from different approaches and scales. Additionally, we provide solutions for data serialization using RDF, XML, and DwC-Archives and recommendations of existing controlled vocabularies for some of the terms. Our contribution supports open access to standardized data on plant–pollinator interactions. CONCLUSIONS: The adoption of the vocabulary would facilitate data sharing to support studies ranging from the spatial and temporal distribution of interactions to the taxonomic, phenological, functional, and phylogenetic aspects of plant–pollinator interactions. We expect to fill data and knowledge gaps, thus further enabling scientific research on the ecology and evolution of plant–pollinator communities, biodiversity conservation, ecosystem services, and the development of public policies. The proposed data model is flexible and can be adapted for sharing other types of interactions data by developing discipline-specific vocabularies of terms.
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spelling pubmed-91540842022-06-04 Data standardization of plant–pollinator interactions Salim, José A Saraiva, Antonio M Zermoglio, Paula F Agostini, Kayna Wolowski, Marina Drucker, Debora P Soares, Filipi M Bergamo, Pedro J Varassin, Isabela G Freitas, Leandro Maués, Márcia M Rech, Andre R Veiga, Allan K Acosta, Andre L Araujo, Andréa C Nogueira, Anselmo Blochtein, Betina Freitas, Breno M Albertini, Bruno C Maia-Silva, Camila Nunes, Carlos E P Pires, Carmen S S dos Santos, Charles F Queiroz, Elisa P Cartolano, Etienne A de Oliveira, Favízia F Amorim, Felipe W Fontúrbel, Francisco E da Silva, Gleycon V Consolaro, Hélder Alves-dos-Santos, Isabel Machado, Isabel C Silva, Juliana S Aleixo, Kátia P Carvalheiro, Luísa G Rocca, Márcia A Pinheiro, Mardiore Hrncir, Michael Streher, Nathália S Ferreira, Patricia A de Albuquerque, Patricia M C Maruyama, Pietro K Borges, Rafael C Giannini, Tereza C Brito, Vinícius L G Gigascience Review BACKGROUND: Animal pollination is an important ecosystem function and service, ensuring both the integrity of natural systems and human well-being. Although many knowledge shortfalls remain, some high-quality data sets on biological interactions are now available. The development and adoption of standards for biodiversity data and metadata has promoted great advances in biological data sharing and aggregation, supporting large-scale studies and science-based public policies. However, these standards are currently not suitable to fully support interaction data sharing. RESULTS: Here we present a vocabulary of terms and a data model for sharing plant–pollinator interactions data based on the Darwin Core standard. The vocabulary introduces 48 new terms targeting several aspects of plant–pollinator interactions and can be used to capture information from different approaches and scales. Additionally, we provide solutions for data serialization using RDF, XML, and DwC-Archives and recommendations of existing controlled vocabularies for some of the terms. Our contribution supports open access to standardized data on plant–pollinator interactions. CONCLUSIONS: The adoption of the vocabulary would facilitate data sharing to support studies ranging from the spatial and temporal distribution of interactions to the taxonomic, phenological, functional, and phylogenetic aspects of plant–pollinator interactions. We expect to fill data and knowledge gaps, thus further enabling scientific research on the ecology and evolution of plant–pollinator communities, biodiversity conservation, ecosystem services, and the development of public policies. The proposed data model is flexible and can be adapted for sharing other types of interactions data by developing discipline-specific vocabularies of terms. Oxford University Press 2022-05-26 /pmc/articles/PMC9154084/ /pubmed/35639882 http://dx.doi.org/10.1093/gigascience/giac043 Text en © The Author(s) 2022. Published by Oxford University Press GigaScience. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Review
Salim, José A
Saraiva, Antonio M
Zermoglio, Paula F
Agostini, Kayna
Wolowski, Marina
Drucker, Debora P
Soares, Filipi M
Bergamo, Pedro J
Varassin, Isabela G
Freitas, Leandro
Maués, Márcia M
Rech, Andre R
Veiga, Allan K
Acosta, Andre L
Araujo, Andréa C
Nogueira, Anselmo
Blochtein, Betina
Freitas, Breno M
Albertini, Bruno C
Maia-Silva, Camila
Nunes, Carlos E P
Pires, Carmen S S
dos Santos, Charles F
Queiroz, Elisa P
Cartolano, Etienne A
de Oliveira, Favízia F
Amorim, Felipe W
Fontúrbel, Francisco E
da Silva, Gleycon V
Consolaro, Hélder
Alves-dos-Santos, Isabel
Machado, Isabel C
Silva, Juliana S
Aleixo, Kátia P
Carvalheiro, Luísa G
Rocca, Márcia A
Pinheiro, Mardiore
Hrncir, Michael
Streher, Nathália S
Ferreira, Patricia A
de Albuquerque, Patricia M C
Maruyama, Pietro K
Borges, Rafael C
Giannini, Tereza C
Brito, Vinícius L G
Data standardization of plant–pollinator interactions
title Data standardization of plant–pollinator interactions
title_full Data standardization of plant–pollinator interactions
title_fullStr Data standardization of plant–pollinator interactions
title_full_unstemmed Data standardization of plant–pollinator interactions
title_short Data standardization of plant–pollinator interactions
title_sort data standardization of plant–pollinator interactions
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9154084/
https://www.ncbi.nlm.nih.gov/pubmed/35639882
http://dx.doi.org/10.1093/gigascience/giac043
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