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Steer’n’Detect: fast 2D template detection with accurate orientation estimation
MOTIVATION: Rotated template matching is an efficient and versatile algorithm to analyze microscopy images, as it automates the detection of stereotypical structures, such as organelles that can appear at any orientation. Its performance however quickly degrades in noisy image data. RESULTS: We intr...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9154219/ https://www.ncbi.nlm.nih.gov/pubmed/35435214 http://dx.doi.org/10.1093/bioinformatics/btac270 |
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author | Uhlmann, Virginie Püspöki, Zsuzsanna Depeursinge, Adrien Unser, Michael Sage, Daniel Fageot, Julien |
author_facet | Uhlmann, Virginie Püspöki, Zsuzsanna Depeursinge, Adrien Unser, Michael Sage, Daniel Fageot, Julien |
author_sort | Uhlmann, Virginie |
collection | PubMed |
description | MOTIVATION: Rotated template matching is an efficient and versatile algorithm to analyze microscopy images, as it automates the detection of stereotypical structures, such as organelles that can appear at any orientation. Its performance however quickly degrades in noisy image data. RESULTS: We introduce Steer’n’Detect, an ImageJ plugin implementing a recently published algorithm to detect patterns of interest at any orientation with high accuracy from a single template in 2D images. Steer’n’Detect provides a faster and more robust substitute to template matching. By adapting to the statistics of the image background, it guarantees accurate results even in the presence of noise. The plugin comes with an intuitive user interface facilitating results analysis and further post-processing. AVAILABILITY AND IMPLEMENTATION: https://github.com/Biomedical-Imaging-Group/Steer-n-Detect. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. |
format | Online Article Text |
id | pubmed-9154219 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-91542192022-06-04 Steer’n’Detect: fast 2D template detection with accurate orientation estimation Uhlmann, Virginie Püspöki, Zsuzsanna Depeursinge, Adrien Unser, Michael Sage, Daniel Fageot, Julien Bioinformatics Applications Notes MOTIVATION: Rotated template matching is an efficient and versatile algorithm to analyze microscopy images, as it automates the detection of stereotypical structures, such as organelles that can appear at any orientation. Its performance however quickly degrades in noisy image data. RESULTS: We introduce Steer’n’Detect, an ImageJ plugin implementing a recently published algorithm to detect patterns of interest at any orientation with high accuracy from a single template in 2D images. Steer’n’Detect provides a faster and more robust substitute to template matching. By adapting to the statistics of the image background, it guarantees accurate results even in the presence of noise. The plugin comes with an intuitive user interface facilitating results analysis and further post-processing. AVAILABILITY AND IMPLEMENTATION: https://github.com/Biomedical-Imaging-Group/Steer-n-Detect. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2022-04-18 /pmc/articles/PMC9154219/ /pubmed/35435214 http://dx.doi.org/10.1093/bioinformatics/btac270 Text en © The Author(s) 2022. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Applications Notes Uhlmann, Virginie Püspöki, Zsuzsanna Depeursinge, Adrien Unser, Michael Sage, Daniel Fageot, Julien Steer’n’Detect: fast 2D template detection with accurate orientation estimation |
title | Steer’n’Detect: fast 2D template detection with accurate orientation estimation |
title_full | Steer’n’Detect: fast 2D template detection with accurate orientation estimation |
title_fullStr | Steer’n’Detect: fast 2D template detection with accurate orientation estimation |
title_full_unstemmed | Steer’n’Detect: fast 2D template detection with accurate orientation estimation |
title_short | Steer’n’Detect: fast 2D template detection with accurate orientation estimation |
title_sort | steer’n’detect: fast 2d template detection with accurate orientation estimation |
topic | Applications Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9154219/ https://www.ncbi.nlm.nih.gov/pubmed/35435214 http://dx.doi.org/10.1093/bioinformatics/btac270 |
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