ELIXIR biovalidator for semantic validation of life science metadata

SUMMARY: To advance biomedical research, increasingly large amounts of complex data need to be discovered and integrated. This requires syntactic and semantic validation to ensure shared understanding of relevant entities. This article describes the ELIXIR biovalidator, which extends the syntactic v...

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Detalles Bibliográficos
Autores principales: Liyanage, Isuru, Burdett, Tony, Droesbeke, Bert, Erdos, Karoly, Fernandez, Rolando, Gray, Alasdair, Haseeb, Muhammad, Jupp, Simon, Penim, Flavia, Pommier, Cyril, Rocca-Serra, Philippe, Courtot, Mélanie, Coppens, Frederik
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9154242/
https://www.ncbi.nlm.nih.gov/pubmed/35380605
http://dx.doi.org/10.1093/bioinformatics/btac195
Descripción
Sumario:SUMMARY: To advance biomedical research, increasingly large amounts of complex data need to be discovered and integrated. This requires syntactic and semantic validation to ensure shared understanding of relevant entities. This article describes the ELIXIR biovalidator, which extends the syntactic validation of the widely used AJV library with ontology-based validation of JSON documents. AVAILABILITY AND IMPLEMENTATION: Source code: https://github.com/elixir-europe/biovalidator, Release: v1.9.1, License: Apache License 2.0, Deployed at: https://www.ebi.ac.uk/biosamples/schema/validator/validate. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

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