Cargando…

Two decades of suspect evidence for adaptive molecular evolution—negative selection confounding positive-selection signals

There has been a large literature in the last two decades affirming adaptive DNA sequence evolution between species. The main lines of evidence are from (i) the McDonald-Kreitman (MK) test, which compares divergence and polymorphism data, and (ii) the phylogenetic analysis by maximum likelihood (PAM...

Descripción completa

Detalles Bibliográficos
Autores principales:	Chen, Qipian, Yang, Hao, Feng, Xiao, Chen, Qingjian, Shi, Suhua, Wu, Chung-I, He, Ziwen
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2021
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9154339/ https://www.ncbi.nlm.nih.gov/pubmed/35663241 http://dx.doi.org/10.1093/nsr/nwab217

Ejemplares similares

Negative Frequency-Dependent Selection Is Frequently Confounding
por: Brisson, Dustin
Publicado: (2018)

Molecular adaptation to salinity fluctuation in tropical intertidal environments of a mangrove tree Sonneratia alba
por: Feng, Xiao, et al.
Publicado: (2020)

Molecular Evolution in Small Steps under Prevailing Negative Selection: A Nearly Universal Rule of Codon Substitution
por: Chen, Qingjian, et al.
Publicado: (2019)

Principles of confounder selection
por: VanderWeele, Tyler J.
Publicado: (2019)

RNA Aptamer Evolution: Two Decades of SELEction
por: Aquino-Jarquin, Guillermo, et al.
Publicado: (2011)

Confounding by Indication in Studies of Selective Serotonin Reuptake Inhibitors
por: Lee, Jimin, et al.
Publicado: (2022)

Historical contingency in the evolution of antibiotic resistance after decades of relaxed selection
por: Card, Kyle J., et al.
Publicado: (2019)

Adaptive Evolution Hotspots at the GC-Extremes of the Human Genome: Evidence for Two Functionally Distinct Pathways of Positive Selection
por: Tang, Clara S. M., et al.
Publicado: (2010)

Balancing Positive and Negative Selection: In Vivo Evolution of Candida lusitaniae MRR1
por: Demers, Elora G., et al.
Publicado: (2021)

Extensive gene flow in secondary sympatry after allopatric speciation
por: Wang, Xinfeng, et al.
Publicado: (2022)

Adaptive Molecular Evolution of AKT3 Gene for Positive Diversifying Selection in Mammals
por: Farmanullah,, et al.
Publicado: (2020)

Positive cultures and clinical outcomes in septic patients: be aware of the influence from patient selection and the in-hospital confounders
por: Jouffroy, Romain, et al.
Publicado: (2019)

Selection of confounding variables should not be based on observed associations with exposure
por: Groenwold, Rolf H. H., et al.
Publicado: (2011)

The change in estimate method for selecting confounders: A simulation study
por: Talbot, Denis, et al.
Publicado: (2021)

Adaptive molecular evolution of MC1R gene reveals the evidence for positive diversifying selection in indigenous goat populations
por: Ahmad, Hafiz Ishfaq, et al.
Publicado: (2017)

Pronounced genetic differentiation and recent secondary contact in the mangrove tree Lumnitzera racemosa revealed by population genomic analyses
por: Li, Jianfang, et al.
Publicado: (2016)

Detecting Past Positive Selection through Ongoing Negative Selection
por: Bazykin, Georgii A., et al.
Publicado: (2011)

Molecular Evolution of GYPC: Evidence for Recent Structural Innovation and Positive Selection in Humans
por: Wilder, Jason A., et al.
Publicado: (2009)

Genetic association studies and the effect of misclassification and selection bias in putative confounders
por: Avery, Christy L, et al.
Publicado: (2009)

Selective Laparoscopic Approach in Suspected Gallbladder Malignancy
por: Wright, G. Paul, et al.
Publicado: (2013)

Uncovering the dispersion history, adaptive evolution and selection of wheat in China
por: Zhou, Yong, et al.
Publicado: (2017)

Expansion and adaptive evolution of the WRKY transcription factor family in Avicennia mangrove trees
por: Feng, Xiao, et al.
Publicado: (2023)

Estimation of the average treatment effect with variable selection and measurement error simultaneously addressed for potential confounders
por: Yi, Grace Y., et al.
Publicado: (2023)

Adaptive convergence at the genomic level—prevalent, uncommon or very rare?
por: He, Ziwen, et al.
Publicado: (2020)

Evidence for Widespread Positive and Negative Selection in Coding and Conserved Noncoding Regions of Capsella grandiflora
por: Williamson, Robert J., et al.
Publicado: (2014)

Transcriptome analyses provide insights into the phylogeny and adaptive evolution of the mangrove fern genus Acrostichum
por: Zhang, Zhang, et al.
Publicado: (2016)

Positive Selection in Gene Regulatory Factors Suggests Adaptive Pleiotropic Changes During Human Evolution
por: Jovanovic, Vladimir M., et al.
Publicado: (2021)

Evolution of Genes Involved in Gamete Interaction: Evidence for Positive Selection, Duplications and Losses in Vertebrates
por: Meslin, Camille, et al.
Publicado: (2012)

Positive Selection Drives the Adaptive Evolution of Mitochondrial Antiviral Signaling (MAVS) Proteins-Mediating Innate Immunity in Mammals
por: Ahmad, Hafiz Ishfaq, et al.
Publicado: (2022)

Positive and Negative Selection in the Thymus and the Thymic Paradox
por: Reza, Julie N., et al.
Publicado: (1998)

Negative frequency dependent selection unites ecology and evolution
por: Christie, Mark R., et al.
Publicado: (2023)

Improving the Power of GWAS and Avoiding Confounding from Population Stratification with PC-Select
por: Tucker, George, et al.
Publicado: (2014)

Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization
por: Goren, Emily, et al.
Publicado: (2021)

Disentangling the association between alcohol consumption and employment status: causation, selection or confounding?
por: Mangot-Sala, Lluís, et al.
Publicado: (2022)

Positive Selection and the Evolution of izumo Genes in Mammals
por: Grayson, Phil, et al.
Publicado: (2012)

Purifying and positive selection in the evolution of stop codons
por: Belinky, Frida, et al.
Publicado: (2018)

Evolution of Adaptive Behaviour in Robots by Means of Darwinian Selection
por: Floreano, Dario, et al.
Publicado: (2010)

Admixture-enabled selection for rapid adaptive evolution in the Americas
por: Norris, Emily T., et al.
Publicado: (2020)

A Mutation–Selection Model of Protein Evolution under Persistent Positive Selection
por: Tamuri, Asif U, et al.
Publicado: (2021)

Adaptive evolution of the spike gene of SARS coronavirus: changes in positively selected sites in different epidemic groups
por: Zhang, Chi-Yu, et al.
Publicado: (2006)

Cannot write session to /tmp/vufind_sessions/sess_q1njrj059sdgfjh1n8hlqul9ta