Detecting SARS-CoV-2 Omicron B.1.1.529 Variant in Wastewater Samples by Using Nanopore Sequencing

We report wastewater surveillance for SARS-CoV-2 variants of concern by using mutation-specific, real-time PCR and rapid nanopore sequencing. This surveillance might be useful for an early warning in a scenario in which a new variant is emerging, even in areas that have low virus incidences.

Detalles Bibliográficos
Autores principales: Rasmussen, Lasse D., Richter, Stine R., Midgley, Sofie E., Franck, Kristina T.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Centers for Disease Control and Prevention 2022
Materias:
Research Letter
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9155873/
https://www.ncbi.nlm.nih.gov/pubmed/35362410
http://dx.doi.org/10.3201/eid2806.220194
_version_ 1784718328101601280
author Rasmussen, Lasse D.
Richter, Stine R.
Midgley, Sofie E.
Franck, Kristina T.
author_facet Rasmussen, Lasse D.
Richter, Stine R.
Midgley, Sofie E.
Franck, Kristina T.
author_sort Rasmussen, Lasse D.
collection PubMed
description We report wastewater surveillance for SARS-CoV-2 variants of concern by using mutation-specific, real-time PCR and rapid nanopore sequencing. This surveillance might be useful for an early warning in a scenario in which a new variant is emerging, even in areas that have low virus incidences.
format Online
Article
Text
id pubmed-9155873
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Centers for Disease Control and Prevention
record_format MEDLINE/PubMed
spelling pubmed-91558732022-06-04 Detecting SARS-CoV-2 Omicron B.1.1.529 Variant in Wastewater Samples by Using Nanopore Sequencing Rasmussen, Lasse D. Richter, Stine R. Midgley, Sofie E. Franck, Kristina T. Emerg Infect Dis Research Letter We report wastewater surveillance for SARS-CoV-2 variants of concern by using mutation-specific, real-time PCR and rapid nanopore sequencing. This surveillance might be useful for an early warning in a scenario in which a new variant is emerging, even in areas that have low virus incidences. Centers for Disease Control and Prevention 2022-06 /pmc/articles/PMC9155873/ /pubmed/35362410 http://dx.doi.org/10.3201/eid2806.220194 Text en https://creativecommons.org/licenses/by/4.0/Emerging Infectious Diseases is a publication of the U.S. Government. This publication is in the public domain and is therefore without copyright. All text from this work may be reprinted freely. Use of these materials should be properly cited.
spellingShingle Research Letter
Rasmussen, Lasse D.
Richter, Stine R.
Midgley, Sofie E.
Franck, Kristina T.
Detecting SARS-CoV-2 Omicron B.1.1.529 Variant in Wastewater Samples by Using Nanopore Sequencing
title Detecting SARS-CoV-2 Omicron B.1.1.529 Variant in Wastewater Samples by Using Nanopore Sequencing
title_full Detecting SARS-CoV-2 Omicron B.1.1.529 Variant in Wastewater Samples by Using Nanopore Sequencing
title_fullStr Detecting SARS-CoV-2 Omicron B.1.1.529 Variant in Wastewater Samples by Using Nanopore Sequencing
title_full_unstemmed Detecting SARS-CoV-2 Omicron B.1.1.529 Variant in Wastewater Samples by Using Nanopore Sequencing
title_short Detecting SARS-CoV-2 Omicron B.1.1.529 Variant in Wastewater Samples by Using Nanopore Sequencing
title_sort detecting sars-cov-2 omicron b.1.1.529 variant in wastewater samples by using nanopore sequencing
topic Research Letter
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9155873/
https://www.ncbi.nlm.nih.gov/pubmed/35362410
http://dx.doi.org/10.3201/eid2806.220194
work_keys_str_mv AT rasmussenlassed detectingsarscov2omicronb11529variantinwastewatersamplesbyusingnanoporesequencing
AT richterstiner detectingsarscov2omicronb11529variantinwastewatersamplesbyusingnanoporesequencing
AT midgleysofiee detectingsarscov2omicronb11529variantinwastewatersamplesbyusingnanoporesequencing
AT franckkristinat detectingsarscov2omicronb11529variantinwastewatersamplesbyusingnanoporesequencing

Ejemplares similares