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A panel of necroptosis-related genes predicts the prognosis of pancreatic adenocarcinoma

Pancreatic adenocarcinoma (PAAD) has become one of the deadliest malignancies in the world. Since necroptosis plays a crucial role in regulating the immune system, it is necessary to develop novel prognostic biomarkers associated with necroptosis and explore its potential role in PAAD. The transcrip...

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Autores principales: Luo, Zhengdong, Wang, Lei, Shang, Ziqi, Guo, Qining, Liu, Qi, Zhang, Mengjiao, Li, Tingting, Wang, Yifeng, Zhang, Yanli, Zhang, Yi, Zhang, Xin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Neoplasia Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9157256/
https://www.ncbi.nlm.nih.gov/pubmed/35635957
http://dx.doi.org/10.1016/j.tranon.2022.101462
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author Luo, Zhengdong
Wang, Lei
Shang, Ziqi
Guo, Qining
Liu, Qi
Zhang, Mengjiao
Li, Tingting
Wang, Yifeng
Zhang, Yanli
Zhang, Yi
Zhang, Xin
author_facet Luo, Zhengdong
Wang, Lei
Shang, Ziqi
Guo, Qining
Liu, Qi
Zhang, Mengjiao
Li, Tingting
Wang, Yifeng
Zhang, Yanli
Zhang, Yi
Zhang, Xin
author_sort Luo, Zhengdong
collection PubMed
description Pancreatic adenocarcinoma (PAAD) has become one of the deadliest malignancies in the world. Since necroptosis plays a crucial role in regulating the immune system, it is necessary to develop novel prognostic biomarkers associated with necroptosis and explore its potential role in PAAD. The transcriptome RNA-seq data of PAAD were downloaded from the TCGA and GTEx databases. A prognostic signature was constructed by the least absolute shrinkage and selection operator (LASSO) Cox regression, and its prognostic value was evaluated by nomogram and validated in an independent GEO cohort. We identified a total of 24 differentially expressed NRGs in PAAD, and constructed a prognostic signature with 5 NRGs, which showed good performance in predicting the prognosis of PAAD patients. The ROC curves for 1-, 3-, and 5-year survival rate were 0.652, 0.778, and 0.817, respectively. This prognostic signature showed consistent prognosis prediction in an independent patient cohort. Furthermore, the correlations between 5-NRGs signature and TMB, MSI, histopathological classification, immune infiltration, immune types, and immunomodulators were all significant. Notably, the expression profiles of the five NRGs in exosomes of serum were consistent with their expression in tumor tissues. These data suggested that the 5-NRGs signature is a promising biomarker for predicting the prognosis of PAAD.
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spelling pubmed-91572562022-06-04 A panel of necroptosis-related genes predicts the prognosis of pancreatic adenocarcinoma Luo, Zhengdong Wang, Lei Shang, Ziqi Guo, Qining Liu, Qi Zhang, Mengjiao Li, Tingting Wang, Yifeng Zhang, Yanli Zhang, Yi Zhang, Xin Transl Oncol Original Research Pancreatic adenocarcinoma (PAAD) has become one of the deadliest malignancies in the world. Since necroptosis plays a crucial role in regulating the immune system, it is necessary to develop novel prognostic biomarkers associated with necroptosis and explore its potential role in PAAD. The transcriptome RNA-seq data of PAAD were downloaded from the TCGA and GTEx databases. A prognostic signature was constructed by the least absolute shrinkage and selection operator (LASSO) Cox regression, and its prognostic value was evaluated by nomogram and validated in an independent GEO cohort. We identified a total of 24 differentially expressed NRGs in PAAD, and constructed a prognostic signature with 5 NRGs, which showed good performance in predicting the prognosis of PAAD patients. The ROC curves for 1-, 3-, and 5-year survival rate were 0.652, 0.778, and 0.817, respectively. This prognostic signature showed consistent prognosis prediction in an independent patient cohort. Furthermore, the correlations between 5-NRGs signature and TMB, MSI, histopathological classification, immune infiltration, immune types, and immunomodulators were all significant. Notably, the expression profiles of the five NRGs in exosomes of serum were consistent with their expression in tumor tissues. These data suggested that the 5-NRGs signature is a promising biomarker for predicting the prognosis of PAAD. Neoplasia Press 2022-05-27 /pmc/articles/PMC9157256/ /pubmed/35635957 http://dx.doi.org/10.1016/j.tranon.2022.101462 Text en © 2022 The Authors. Published by Elsevier Inc. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Original Research
Luo, Zhengdong
Wang, Lei
Shang, Ziqi
Guo, Qining
Liu, Qi
Zhang, Mengjiao
Li, Tingting
Wang, Yifeng
Zhang, Yanli
Zhang, Yi
Zhang, Xin
A panel of necroptosis-related genes predicts the prognosis of pancreatic adenocarcinoma
title A panel of necroptosis-related genes predicts the prognosis of pancreatic adenocarcinoma
title_full A panel of necroptosis-related genes predicts the prognosis of pancreatic adenocarcinoma
title_fullStr A panel of necroptosis-related genes predicts the prognosis of pancreatic adenocarcinoma
title_full_unstemmed A panel of necroptosis-related genes predicts the prognosis of pancreatic adenocarcinoma
title_short A panel of necroptosis-related genes predicts the prognosis of pancreatic adenocarcinoma
title_sort panel of necroptosis-related genes predicts the prognosis of pancreatic adenocarcinoma
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9157256/
https://www.ncbi.nlm.nih.gov/pubmed/35635957
http://dx.doi.org/10.1016/j.tranon.2022.101462
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