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Recognition of esophagitis in endoscopic images using transfer learning

BACKGROUND: Esophagitis is an inflammatory and damaging process of the esophageal mucosa, which is confirmed by endoscopic visualization and may, in extreme cases, result in stenosis, fistulization and esophageal perforation. The use of deep learning (a field of artificial intelligence) techniques c...

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Autores principales: Caires Silveira, Elena, Santos Corrêa, Caio Fellipe, Madureira Silva, Leonardo, Almeida Santos, Bruna, Mattos Pretti, Soraya, Freire de Melo, Fabrício
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Baishideng Publishing Group Inc 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9157692/
https://www.ncbi.nlm.nih.gov/pubmed/35719896
http://dx.doi.org/10.4253/wjge.v14.i5.311
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author Caires Silveira, Elena
Santos Corrêa, Caio Fellipe
Madureira Silva, Leonardo
Almeida Santos, Bruna
Mattos Pretti, Soraya
Freire de Melo, Fabrício
author_facet Caires Silveira, Elena
Santos Corrêa, Caio Fellipe
Madureira Silva, Leonardo
Almeida Santos, Bruna
Mattos Pretti, Soraya
Freire de Melo, Fabrício
author_sort Caires Silveira, Elena
collection PubMed
description BACKGROUND: Esophagitis is an inflammatory and damaging process of the esophageal mucosa, which is confirmed by endoscopic visualization and may, in extreme cases, result in stenosis, fistulization and esophageal perforation. The use of deep learning (a field of artificial intelligence) techniques can be considered to determine the presence of esophageal lesions compatible with esophagitis. AIM: To develop, using transfer learning, a deep neural network model to recognize the presence of esophagitis in endoscopic images. METHODS: Endoscopic images of 1932 patients with a diagnosis of esophagitis and 1663 patients without any pathological diagnosis provenient from the KSAVIR and HyperKSAVIR datasets were splitted in training (80%) and test (20%) and used to develop and evaluate a binary deep learning classifier built using the DenseNet-201 architecture, a densely connected convolutional network, with weights pretrained on the ImageNet image set and fine-tuned during training. The classifier model performance was evaluated in the test set according to accuracy, sensitivity, specificity and area under the receiver operating characteristic curve (AUC). RESULTS: The model was trained using Adam optimizer with a learning rate of 0.0001 and applying binary cross entropy loss function. In the test set (n = 719), the classifier achieved 93.32% accuracy, 93.18% sensitivity, 93.46% specificity and a 0.96 AUC. Heatmaps for spatial predictive relevance in esophagitis endoscopic images from the test set were also plotted. In face of the obtained results, the use of dense convolutional neural networks with pretrained and fine-tuned weights proves to be a good strategy for predictive modeling for esophagitis recognition in endoscopic images. In addition, adopting the classification approach combined with the subsequent plotting of heat maps associated with the classificatory decision gives greater explainability to the model. CONCLUSION: It is opportune to raise new studies involving transfer learning for the analysis of endoscopic images, aiming to improve, validate and disseminate its use for clinical practice.
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spelling pubmed-91576922022-06-17 Recognition of esophagitis in endoscopic images using transfer learning Caires Silveira, Elena Santos Corrêa, Caio Fellipe Madureira Silva, Leonardo Almeida Santos, Bruna Mattos Pretti, Soraya Freire de Melo, Fabrício World J Gastrointest Endosc Retrospective Study BACKGROUND: Esophagitis is an inflammatory and damaging process of the esophageal mucosa, which is confirmed by endoscopic visualization and may, in extreme cases, result in stenosis, fistulization and esophageal perforation. The use of deep learning (a field of artificial intelligence) techniques can be considered to determine the presence of esophageal lesions compatible with esophagitis. AIM: To develop, using transfer learning, a deep neural network model to recognize the presence of esophagitis in endoscopic images. METHODS: Endoscopic images of 1932 patients with a diagnosis of esophagitis and 1663 patients without any pathological diagnosis provenient from the KSAVIR and HyperKSAVIR datasets were splitted in training (80%) and test (20%) and used to develop and evaluate a binary deep learning classifier built using the DenseNet-201 architecture, a densely connected convolutional network, with weights pretrained on the ImageNet image set and fine-tuned during training. The classifier model performance was evaluated in the test set according to accuracy, sensitivity, specificity and area under the receiver operating characteristic curve (AUC). RESULTS: The model was trained using Adam optimizer with a learning rate of 0.0001 and applying binary cross entropy loss function. In the test set (n = 719), the classifier achieved 93.32% accuracy, 93.18% sensitivity, 93.46% specificity and a 0.96 AUC. Heatmaps for spatial predictive relevance in esophagitis endoscopic images from the test set were also plotted. In face of the obtained results, the use of dense convolutional neural networks with pretrained and fine-tuned weights proves to be a good strategy for predictive modeling for esophagitis recognition in endoscopic images. In addition, adopting the classification approach combined with the subsequent plotting of heat maps associated with the classificatory decision gives greater explainability to the model. CONCLUSION: It is opportune to raise new studies involving transfer learning for the analysis of endoscopic images, aiming to improve, validate and disseminate its use for clinical practice. Baishideng Publishing Group Inc 2022-05-16 2022-05-16 /pmc/articles/PMC9157692/ /pubmed/35719896 http://dx.doi.org/10.4253/wjge.v14.i5.311 Text en ©The Author(s) 2022. Published by Baishideng Publishing Group Inc. All rights reserved. https://creativecommons.org/licenses/by-nc/4.0/This article is an open-access article that was selected by an in-house editor and fully peer-reviewed by external reviewers. It is distributed in accordance with the Creative Commons Attribution NonCommercial (CC BY-NC 4.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited and the use is non-commercial. See: http://creativecommons.org/Licenses/by-nc/4.0/
spellingShingle Retrospective Study
Caires Silveira, Elena
Santos Corrêa, Caio Fellipe
Madureira Silva, Leonardo
Almeida Santos, Bruna
Mattos Pretti, Soraya
Freire de Melo, Fabrício
Recognition of esophagitis in endoscopic images using transfer learning
title Recognition of esophagitis in endoscopic images using transfer learning
title_full Recognition of esophagitis in endoscopic images using transfer learning
title_fullStr Recognition of esophagitis in endoscopic images using transfer learning
title_full_unstemmed Recognition of esophagitis in endoscopic images using transfer learning
title_short Recognition of esophagitis in endoscopic images using transfer learning
title_sort recognition of esophagitis in endoscopic images using transfer learning
topic Retrospective Study
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9157692/
https://www.ncbi.nlm.nih.gov/pubmed/35719896
http://dx.doi.org/10.4253/wjge.v14.i5.311
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