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A Prognostic Survival Model of Pancreatic Adenocarcinoma Based on Metabolism-Related Gene Expression

Accurately predicting the survival prospects of patients suffering from pancreatic adenocarcinoma (PAAD) is challenging. In this study, we analyzed RNA matrices of 182 subjects with PAAD based on public datasets obtained from The Cancer Genome Atlas (TCGA) as training datasets and those of 63 subjec...

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Autores principales: Xie, Lin-ying, Huang, Han-ying, Fang, Tian, Liang, Jia-ying, Hao, Yu-lei, Zhang, Xue-jiao, Xie, Yi-xin, Wang, Chang, Tan, Ye-hui, Zeng, Lei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9158121/
https://www.ncbi.nlm.nih.gov/pubmed/35664305
http://dx.doi.org/10.3389/fgene.2022.804190
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author Xie, Lin-ying
Huang, Han-ying
Fang, Tian
Liang, Jia-ying
Hao, Yu-lei
Zhang, Xue-jiao
Xie, Yi-xin
Wang, Chang
Tan, Ye-hui
Zeng, Lei
author_facet Xie, Lin-ying
Huang, Han-ying
Fang, Tian
Liang, Jia-ying
Hao, Yu-lei
Zhang, Xue-jiao
Xie, Yi-xin
Wang, Chang
Tan, Ye-hui
Zeng, Lei
author_sort Xie, Lin-ying
collection PubMed
description Accurately predicting the survival prospects of patients suffering from pancreatic adenocarcinoma (PAAD) is challenging. In this study, we analyzed RNA matrices of 182 subjects with PAAD based on public datasets obtained from The Cancer Genome Atlas (TCGA) as training datasets and those of 63 subjects obtained from the Gene Expression Omnibus (GEO) database as the validation dataset. Genes regulating the metabolism of PAAD cells correlated with survival were identified. Furthermore, LASSO Cox regression analyses were conducted to identify six genes (XDH, MBOAT2, PTGES, AK4, PAICS, and CKB) to create a metabolic risk score. The proposed scoring framework attained the robust predictive performance, with 2-year survival areas under the curve (AUCs) of 0.61 in the training cohort and 0.66 in the validation cohort. Compared with the subjects in the low-risk cohort, subjects in the high-risk training cohort presented a worse survival outcome. The metabolic risk score increased the accuracy of survival prediction in patients suffering from PAAD.
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spelling pubmed-91581212022-06-02 A Prognostic Survival Model of Pancreatic Adenocarcinoma Based on Metabolism-Related Gene Expression Xie, Lin-ying Huang, Han-ying Fang, Tian Liang, Jia-ying Hao, Yu-lei Zhang, Xue-jiao Xie, Yi-xin Wang, Chang Tan, Ye-hui Zeng, Lei Front Genet Genetics Accurately predicting the survival prospects of patients suffering from pancreatic adenocarcinoma (PAAD) is challenging. In this study, we analyzed RNA matrices of 182 subjects with PAAD based on public datasets obtained from The Cancer Genome Atlas (TCGA) as training datasets and those of 63 subjects obtained from the Gene Expression Omnibus (GEO) database as the validation dataset. Genes regulating the metabolism of PAAD cells correlated with survival were identified. Furthermore, LASSO Cox regression analyses were conducted to identify six genes (XDH, MBOAT2, PTGES, AK4, PAICS, and CKB) to create a metabolic risk score. The proposed scoring framework attained the robust predictive performance, with 2-year survival areas under the curve (AUCs) of 0.61 in the training cohort and 0.66 in the validation cohort. Compared with the subjects in the low-risk cohort, subjects in the high-risk training cohort presented a worse survival outcome. The metabolic risk score increased the accuracy of survival prediction in patients suffering from PAAD. Frontiers Media S.A. 2022-05-18 /pmc/articles/PMC9158121/ /pubmed/35664305 http://dx.doi.org/10.3389/fgene.2022.804190 Text en Copyright © 2022 Xie, Huang, Fang, Liang, Hao, Zhang, Xie, Wang, Tan and Zeng. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Xie, Lin-ying
Huang, Han-ying
Fang, Tian
Liang, Jia-ying
Hao, Yu-lei
Zhang, Xue-jiao
Xie, Yi-xin
Wang, Chang
Tan, Ye-hui
Zeng, Lei
A Prognostic Survival Model of Pancreatic Adenocarcinoma Based on Metabolism-Related Gene Expression
title A Prognostic Survival Model of Pancreatic Adenocarcinoma Based on Metabolism-Related Gene Expression
title_full A Prognostic Survival Model of Pancreatic Adenocarcinoma Based on Metabolism-Related Gene Expression
title_fullStr A Prognostic Survival Model of Pancreatic Adenocarcinoma Based on Metabolism-Related Gene Expression
title_full_unstemmed A Prognostic Survival Model of Pancreatic Adenocarcinoma Based on Metabolism-Related Gene Expression
title_short A Prognostic Survival Model of Pancreatic Adenocarcinoma Based on Metabolism-Related Gene Expression
title_sort prognostic survival model of pancreatic adenocarcinoma based on metabolism-related gene expression
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9158121/
https://www.ncbi.nlm.nih.gov/pubmed/35664305
http://dx.doi.org/10.3389/fgene.2022.804190
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