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Raw diffraction data are our ground truth from which all subsequent workflows develop

Defining best practice in science is challenging. International consensus is facilitated by the International Science Council via its members such as the International Union of Crystallography (IUCr). The crystallographic community has many decades of tradition linking articles with the underpinning...

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Autor principal: Helliwell, John R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9159283/
https://www.ncbi.nlm.nih.gov/pubmed/35647915
http://dx.doi.org/10.1107/S2059798322003795
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author Helliwell, John R.
author_facet Helliwell, John R.
author_sort Helliwell, John R.
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description Defining best practice in science is challenging. International consensus is facilitated by the International Science Council via its members such as the International Union of Crystallography (IUCr). The crystallographic community has many decades of tradition linking articles with the underpinning data, and is admired across all sciences accordingly. Crystallography has always been at the forefront of harnessing new technology in the service of consensus. Technology has provided new vast data-archiving opportunities, allowing the preservation of raw diffraction data, along with article and database depositions of a model’s coordinates and associated structure factors. The raw diffraction data, which can now be preserved, are the ground truth from which all subsequent workflows develop. Journal editorial boards provide a practical forum for setting the criteria to decide if a study’s files are truly the version of record. Within that, reality involves a variance of reasonable workflows. But what is a reasonable variance? Workflows must be detailed carefully by authors in explaining what they have done. There is a great, and increasing, diversity of macromolecular crystallography analyses, and yet an increased constraint on how much can be written in an article about the workflow used. Raw data provide the ultimate reproducibility evidence. A part of reproducibility and replicability is using an agreed vocabulary; the meaning of words such as precision and accuracy and, more recently, the confidence of a protein structure prediction should feature in approaching ‘truth’.
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spelling pubmed-91592832022-06-17 Raw diffraction data are our ground truth from which all subsequent workflows develop Helliwell, John R. Acta Crystallogr D Struct Biol Ccp4 Defining best practice in science is challenging. International consensus is facilitated by the International Science Council via its members such as the International Union of Crystallography (IUCr). The crystallographic community has many decades of tradition linking articles with the underpinning data, and is admired across all sciences accordingly. Crystallography has always been at the forefront of harnessing new technology in the service of consensus. Technology has provided new vast data-archiving opportunities, allowing the preservation of raw diffraction data, along with article and database depositions of a model’s coordinates and associated structure factors. The raw diffraction data, which can now be preserved, are the ground truth from which all subsequent workflows develop. Journal editorial boards provide a practical forum for setting the criteria to decide if a study’s files are truly the version of record. Within that, reality involves a variance of reasonable workflows. But what is a reasonable variance? Workflows must be detailed carefully by authors in explaining what they have done. There is a great, and increasing, diversity of macromolecular crystallography analyses, and yet an increased constraint on how much can be written in an article about the workflow used. Raw data provide the ultimate reproducibility evidence. A part of reproducibility and replicability is using an agreed vocabulary; the meaning of words such as precision and accuracy and, more recently, the confidence of a protein structure prediction should feature in approaching ‘truth’. International Union of Crystallography 2022-05-18 /pmc/articles/PMC9159283/ /pubmed/35647915 http://dx.doi.org/10.1107/S2059798322003795 Text en © John R. Helliwell 2022 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Ccp4
Helliwell, John R.
Raw diffraction data are our ground truth from which all subsequent workflows develop
title Raw diffraction data are our ground truth from which all subsequent workflows develop
title_full Raw diffraction data are our ground truth from which all subsequent workflows develop
title_fullStr Raw diffraction data are our ground truth from which all subsequent workflows develop
title_full_unstemmed Raw diffraction data are our ground truth from which all subsequent workflows develop
title_short Raw diffraction data are our ground truth from which all subsequent workflows develop
title_sort raw diffraction data are our ground truth from which all subsequent workflows develop
topic Ccp4
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9159283/
https://www.ncbi.nlm.nih.gov/pubmed/35647915
http://dx.doi.org/10.1107/S2059798322003795
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