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Racemic crystal structures of A-DNA duplexes

The ease with which racemic mixtures crystallize compared with the equivalent chiral systems is routinely taken advantage of to produce crystals of small molecules. However, biological macromolecules such as DNA and proteins are naturally chiral, and thus the limited range of chiral space groups ava...

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Autores principales: Mandal, Pradeep K., Collie, Gavin W., Kauffmann, Brice, Huc, Ivan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9159285/
https://www.ncbi.nlm.nih.gov/pubmed/35647918
http://dx.doi.org/10.1107/S2059798322003928
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author Mandal, Pradeep K.
Collie, Gavin W.
Kauffmann, Brice
Huc, Ivan
author_facet Mandal, Pradeep K.
Collie, Gavin W.
Kauffmann, Brice
Huc, Ivan
author_sort Mandal, Pradeep K.
collection PubMed
description The ease with which racemic mixtures crystallize compared with the equivalent chiral systems is routinely taken advantage of to produce crystals of small molecules. However, biological macromolecules such as DNA and proteins are naturally chiral, and thus the limited range of chiral space groups available hampers the crystallization of such molecules. Inspiring work over the past 15 years has shown that racemic mixtures of proteins, which were made possible by impressive advances in protein chemical synthesis, can indeed improve the success rate of protein crystallization experiments. More recently, the racemic crystallization approach was extended to include nucleic acids as a possible aid in the determination of enantiopure DNA crystal structures. Here, findings are reported that suggest that the benefits may extend beyond this. Two racemic crystal structures of the DNA sequence d(CCCGGG) are described which were found to fold into A-form DNA. This form differs from the Z-form DNA conformation adopted by the chiral equivalent in the solid state, suggesting that the use of racemates may also favour the emergence of new conformations. Importantly, the racemic mixture forms interactions in the solid state that differ from the chiral equivalent (including the formation of racemic pseudo-helices), suggesting that the use of racemic DNA mixtures could provide new possibilities for the design of precise self-assembled nanomaterials and nanostructures.
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spelling pubmed-91592852022-06-17 Racemic crystal structures of A-DNA duplexes Mandal, Pradeep K. Collie, Gavin W. Kauffmann, Brice Huc, Ivan Acta Crystallogr D Struct Biol Research Papers The ease with which racemic mixtures crystallize compared with the equivalent chiral systems is routinely taken advantage of to produce crystals of small molecules. However, biological macromolecules such as DNA and proteins are naturally chiral, and thus the limited range of chiral space groups available hampers the crystallization of such molecules. Inspiring work over the past 15 years has shown that racemic mixtures of proteins, which were made possible by impressive advances in protein chemical synthesis, can indeed improve the success rate of protein crystallization experiments. More recently, the racemic crystallization approach was extended to include nucleic acids as a possible aid in the determination of enantiopure DNA crystal structures. Here, findings are reported that suggest that the benefits may extend beyond this. Two racemic crystal structures of the DNA sequence d(CCCGGG) are described which were found to fold into A-form DNA. This form differs from the Z-form DNA conformation adopted by the chiral equivalent in the solid state, suggesting that the use of racemates may also favour the emergence of new conformations. Importantly, the racemic mixture forms interactions in the solid state that differ from the chiral equivalent (including the formation of racemic pseudo-helices), suggesting that the use of racemic DNA mixtures could provide new possibilities for the design of precise self-assembled nanomaterials and nanostructures. International Union of Crystallography 2022-05-09 /pmc/articles/PMC9159285/ /pubmed/35647918 http://dx.doi.org/10.1107/S2059798322003928 Text en © Pradeep K. Mandal et al. 2022 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Mandal, Pradeep K.
Collie, Gavin W.
Kauffmann, Brice
Huc, Ivan
Racemic crystal structures of A-DNA duplexes
title Racemic crystal structures of A-DNA duplexes
title_full Racemic crystal structures of A-DNA duplexes
title_fullStr Racemic crystal structures of A-DNA duplexes
title_full_unstemmed Racemic crystal structures of A-DNA duplexes
title_short Racemic crystal structures of A-DNA duplexes
title_sort racemic crystal structures of a-dna duplexes
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9159285/
https://www.ncbi.nlm.nih.gov/pubmed/35647918
http://dx.doi.org/10.1107/S2059798322003928
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