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Single-support serial isomorphous replacement phasing

The use of single isomorphous replacement (SIR) has become less widespread due to difficulties in sample preparation and the identification of isomorphous native and derivative data sets. Non-isomorphism becomes even more problematic in serial experiments, because it adds natural inter-crystal non-i...

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Autores principales: Foos, Nicolas, Rizk, Mahmoud, Nanao, Max H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9159287/
https://www.ncbi.nlm.nih.gov/pubmed/35647919
http://dx.doi.org/10.1107/S2059798322003977
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author Foos, Nicolas
Rizk, Mahmoud
Nanao, Max H.
author_facet Foos, Nicolas
Rizk, Mahmoud
Nanao, Max H.
author_sort Foos, Nicolas
collection PubMed
description The use of single isomorphous replacement (SIR) has become less widespread due to difficulties in sample preparation and the identification of isomorphous native and derivative data sets. Non-isomorphism becomes even more problematic in serial experiments, because it adds natural inter-crystal non-isomorphism to heavy-atom-soaking-induced non-isomorphism. Here, a method that can successfully address these issues (and indeed can benefit from differences in heavy-atom occupancy) and additionally significantly simplifies the SIR experiment is presented. A single heavy-atom soak into a microcrystalline slurry is performed, followed by automated serial data collection of partial data sets. This produces a set of data collections with a gradient of heavy-atom occupancies, which are reflected in differential merging statistics. These differences can be exploited by an optimized genetic algorithm to segregate the pool of data sets into ‘native’ and ‘derivative’ groups, which can then be used to successfully determine phases experimentally by SIR.
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spelling pubmed-91592872022-06-17 Single-support serial isomorphous replacement phasing Foos, Nicolas Rizk, Mahmoud Nanao, Max H. Acta Crystallogr D Struct Biol Research Papers The use of single isomorphous replacement (SIR) has become less widespread due to difficulties in sample preparation and the identification of isomorphous native and derivative data sets. Non-isomorphism becomes even more problematic in serial experiments, because it adds natural inter-crystal non-isomorphism to heavy-atom-soaking-induced non-isomorphism. Here, a method that can successfully address these issues (and indeed can benefit from differences in heavy-atom occupancy) and additionally significantly simplifies the SIR experiment is presented. A single heavy-atom soak into a microcrystalline slurry is performed, followed by automated serial data collection of partial data sets. This produces a set of data collections with a gradient of heavy-atom occupancies, which are reflected in differential merging statistics. These differences can be exploited by an optimized genetic algorithm to segregate the pool of data sets into ‘native’ and ‘derivative’ groups, which can then be used to successfully determine phases experimentally by SIR. International Union of Crystallography 2022-05-09 /pmc/articles/PMC9159287/ /pubmed/35647919 http://dx.doi.org/10.1107/S2059798322003977 Text en © Foos, Rizk and Nanao 2022 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Foos, Nicolas
Rizk, Mahmoud
Nanao, Max H.
Single-support serial isomorphous replacement phasing
title Single-support serial isomorphous replacement phasing
title_full Single-support serial isomorphous replacement phasing
title_fullStr Single-support serial isomorphous replacement phasing
title_full_unstemmed Single-support serial isomorphous replacement phasing
title_short Single-support serial isomorphous replacement phasing
title_sort single-support serial isomorphous replacement phasing
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9159287/
https://www.ncbi.nlm.nih.gov/pubmed/35647919
http://dx.doi.org/10.1107/S2059798322003977
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