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Single-support serial isomorphous replacement phasing
The use of single isomorphous replacement (SIR) has become less widespread due to difficulties in sample preparation and the identification of isomorphous native and derivative data sets. Non-isomorphism becomes even more problematic in serial experiments, because it adds natural inter-crystal non-i...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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International Union of Crystallography
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9159287/ https://www.ncbi.nlm.nih.gov/pubmed/35647919 http://dx.doi.org/10.1107/S2059798322003977 |
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author | Foos, Nicolas Rizk, Mahmoud Nanao, Max H. |
author_facet | Foos, Nicolas Rizk, Mahmoud Nanao, Max H. |
author_sort | Foos, Nicolas |
collection | PubMed |
description | The use of single isomorphous replacement (SIR) has become less widespread due to difficulties in sample preparation and the identification of isomorphous native and derivative data sets. Non-isomorphism becomes even more problematic in serial experiments, because it adds natural inter-crystal non-isomorphism to heavy-atom-soaking-induced non-isomorphism. Here, a method that can successfully address these issues (and indeed can benefit from differences in heavy-atom occupancy) and additionally significantly simplifies the SIR experiment is presented. A single heavy-atom soak into a microcrystalline slurry is performed, followed by automated serial data collection of partial data sets. This produces a set of data collections with a gradient of heavy-atom occupancies, which are reflected in differential merging statistics. These differences can be exploited by an optimized genetic algorithm to segregate the pool of data sets into ‘native’ and ‘derivative’ groups, which can then be used to successfully determine phases experimentally by SIR. |
format | Online Article Text |
id | pubmed-9159287 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-91592872022-06-17 Single-support serial isomorphous replacement phasing Foos, Nicolas Rizk, Mahmoud Nanao, Max H. Acta Crystallogr D Struct Biol Research Papers The use of single isomorphous replacement (SIR) has become less widespread due to difficulties in sample preparation and the identification of isomorphous native and derivative data sets. Non-isomorphism becomes even more problematic in serial experiments, because it adds natural inter-crystal non-isomorphism to heavy-atom-soaking-induced non-isomorphism. Here, a method that can successfully address these issues (and indeed can benefit from differences in heavy-atom occupancy) and additionally significantly simplifies the SIR experiment is presented. A single heavy-atom soak into a microcrystalline slurry is performed, followed by automated serial data collection of partial data sets. This produces a set of data collections with a gradient of heavy-atom occupancies, which are reflected in differential merging statistics. These differences can be exploited by an optimized genetic algorithm to segregate the pool of data sets into ‘native’ and ‘derivative’ groups, which can then be used to successfully determine phases experimentally by SIR. International Union of Crystallography 2022-05-09 /pmc/articles/PMC9159287/ /pubmed/35647919 http://dx.doi.org/10.1107/S2059798322003977 Text en © Foos, Rizk and Nanao 2022 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Foos, Nicolas Rizk, Mahmoud Nanao, Max H. Single-support serial isomorphous replacement phasing |
title | Single-support serial isomorphous replacement phasing |
title_full | Single-support serial isomorphous replacement phasing |
title_fullStr | Single-support serial isomorphous replacement phasing |
title_full_unstemmed | Single-support serial isomorphous replacement phasing |
title_short | Single-support serial isomorphous replacement phasing |
title_sort | single-support serial isomorphous replacement phasing |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9159287/ https://www.ncbi.nlm.nih.gov/pubmed/35647919 http://dx.doi.org/10.1107/S2059798322003977 |
work_keys_str_mv | AT foosnicolas singlesupportserialisomorphousreplacementphasing AT rizkmahmoud singlesupportserialisomorphousreplacementphasing AT nanaomaxh singlesupportserialisomorphousreplacementphasing |