Cargando…
Flexible protein database based on amino acid k-mers
Identification of proteins is one of the most computationally intensive steps in genomics studies. It usually relies on aligners that do not accommodate rich information on proteins and require additional pipelining steps for protein identification. We introduce kAAmer, a protein database engine bas...
Autores principales: | Déraspe, Maxime, Boisvert, Sébastien, Laviolette, François, Roy, Paul H, Corbeil, Jacques |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9160020/ https://www.ncbi.nlm.nih.gov/pubmed/35650262 http://dx.doi.org/10.1038/s41598-022-12843-9 |
Ejemplares similares
-
Phenetic Comparison of Prokaryotic Genomes Using k-mers
por: Déraspe, Maxime, et al.
Publicado: (2017) -
Predictive computational phenotyping and biomarker discovery using reference-free genome comparisons
por: Drouin, Alexandre, et al.
Publicado: (2016) -
HIV-1 coreceptor usage prediction without multiple alignments: an application of string kernels
por: Boisvert, Sébastien, et al.
Publicado: (2008) -
Ray Meta: scalable de novo metagenome assembly and profiling
por: Boisvert, Sébastien, et al.
Publicado: (2012) -
Machine learning analysis identifies genes differentiating triple negative breast cancers
por: Kothari, Charu, et al.
Publicado: (2020)