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Computing R(0) of dynamic models by a definition-based method

OBJECTIVES: Computing the basic reproduction number (R(0)) in deterministic dynamical models is a hot topic and is frequently demanded by researchers in public health. The next-generation methods (NGM) are widely used for such computation, however, the results of NGM are usually not to be the true R...

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Autores principales: Guo, Xiaohao, Guo, Yichao, Zhao, Zeyu, Yang, Shiting, Su, Yanhua, Zhao, Benhua, Chen, Tianmu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: KeAi Publishing 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9160772/
https://www.ncbi.nlm.nih.gov/pubmed/35702140
http://dx.doi.org/10.1016/j.idm.2022.05.004
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author Guo, Xiaohao
Guo, Yichao
Zhao, Zeyu
Yang, Shiting
Su, Yanhua
Zhao, Benhua
Chen, Tianmu
author_facet Guo, Xiaohao
Guo, Yichao
Zhao, Zeyu
Yang, Shiting
Su, Yanhua
Zhao, Benhua
Chen, Tianmu
author_sort Guo, Xiaohao
collection PubMed
description OBJECTIVES: Computing the basic reproduction number (R(0)) in deterministic dynamical models is a hot topic and is frequently demanded by researchers in public health. The next-generation methods (NGM) are widely used for such computation, however, the results of NGM are usually not to be the true R(0) but only a threshold quantity with little interpretation. In this paper, a definition-based method (DBM) is proposed to solve such a problem. METHODS: Start with the definition of R(0), consider different states that one infected individual may develop into, and take expectations. A comparison with NGM has proceeded. Numerical verification is performed using parameters fitted by data of COVID-19 in Hunan Province. RESULTS: DBM and NGM give identical expressions for single-host models with single-group and interactive R(ij) of single-host models with multi-groups, while difference arises for models partitioned into subgroups. Numerical verification showed the consistencies and differences between DBM and NGM, which supports the conclusion that R(0) derived by DBM with true epidemiological interpretations are better. CONCLUSIONS: DBM is more suitable for single-host models, especially for models partitioned into subgroups. However, for multi-host dynamic models where the true R(0) is failed to define, we may turn to the NGM for the threshold R(0).
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spelling pubmed-91607722022-06-13 Computing R(0) of dynamic models by a definition-based method Guo, Xiaohao Guo, Yichao Zhao, Zeyu Yang, Shiting Su, Yanhua Zhao, Benhua Chen, Tianmu Infect Dis Model Original Research Article OBJECTIVES: Computing the basic reproduction number (R(0)) in deterministic dynamical models is a hot topic and is frequently demanded by researchers in public health. The next-generation methods (NGM) are widely used for such computation, however, the results of NGM are usually not to be the true R(0) but only a threshold quantity with little interpretation. In this paper, a definition-based method (DBM) is proposed to solve such a problem. METHODS: Start with the definition of R(0), consider different states that one infected individual may develop into, and take expectations. A comparison with NGM has proceeded. Numerical verification is performed using parameters fitted by data of COVID-19 in Hunan Province. RESULTS: DBM and NGM give identical expressions for single-host models with single-group and interactive R(ij) of single-host models with multi-groups, while difference arises for models partitioned into subgroups. Numerical verification showed the consistencies and differences between DBM and NGM, which supports the conclusion that R(0) derived by DBM with true epidemiological interpretations are better. CONCLUSIONS: DBM is more suitable for single-host models, especially for models partitioned into subgroups. However, for multi-host dynamic models where the true R(0) is failed to define, we may turn to the NGM for the threshold R(0). KeAi Publishing 2022-05-24 /pmc/articles/PMC9160772/ /pubmed/35702140 http://dx.doi.org/10.1016/j.idm.2022.05.004 Text en © 2022 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Original Research Article
Guo, Xiaohao
Guo, Yichao
Zhao, Zeyu
Yang, Shiting
Su, Yanhua
Zhao, Benhua
Chen, Tianmu
Computing R(0) of dynamic models by a definition-based method
title Computing R(0) of dynamic models by a definition-based method
title_full Computing R(0) of dynamic models by a definition-based method
title_fullStr Computing R(0) of dynamic models by a definition-based method
title_full_unstemmed Computing R(0) of dynamic models by a definition-based method
title_short Computing R(0) of dynamic models by a definition-based method
title_sort computing r(0) of dynamic models by a definition-based method
topic Original Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9160772/
https://www.ncbi.nlm.nih.gov/pubmed/35702140
http://dx.doi.org/10.1016/j.idm.2022.05.004
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