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COVIDNearTerm: A simple method to forecast COVID-19 hospitalizations

INTRODUCTION: COVID-19 has caused tremendous death and suffering since it first emerged in 2019. Soon after its emergence, models were developed to help predict the course of various disease metrics, and these models have been relied upon to help guide public health policy. METHODS: Here we present...

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Autores principales: Olshen, Adam B., Garcia, Ariadna, Kapphahn, Kristopher I., Weng, Yingjie, Vargo, Jason, Pugliese, John A., Crow, David, Wesson, Paul D., Rutherford, George W., Gonen, Mithat, Desai, Manisha
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cambridge University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9161046/
https://www.ncbi.nlm.nih.gov/pubmed/35720970
http://dx.doi.org/10.1017/cts.2022.389
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author Olshen, Adam B.
Garcia, Ariadna
Kapphahn, Kristopher I.
Weng, Yingjie
Vargo, Jason
Pugliese, John A.
Crow, David
Wesson, Paul D.
Rutherford, George W.
Gonen, Mithat
Desai, Manisha
author_facet Olshen, Adam B.
Garcia, Ariadna
Kapphahn, Kristopher I.
Weng, Yingjie
Vargo, Jason
Pugliese, John A.
Crow, David
Wesson, Paul D.
Rutherford, George W.
Gonen, Mithat
Desai, Manisha
author_sort Olshen, Adam B.
collection PubMed
description INTRODUCTION: COVID-19 has caused tremendous death and suffering since it first emerged in 2019. Soon after its emergence, models were developed to help predict the course of various disease metrics, and these models have been relied upon to help guide public health policy. METHODS: Here we present a method called COVIDNearTerm to “forecast” hospitalizations in the short term, two to four weeks from the time of prediction. COVIDNearTerm is based on an autoregressive model and utilizes a parametric bootstrap approach to make predictions. It is easy to use as it requires only previous hospitalization data, and there is an open-source R package that implements the algorithm. We evaluated COVIDNearTerm on San Francisco Bay Area hospitalizations and compared it to models from the California COVID Assessment Tool (CalCAT). RESULTS: We found that COVIDNearTerm predictions were more accurate than the CalCAT ensemble predictions for all comparisons and any CalCAT component for a majority of comparisons. For instance, at the county level our 14-day hospitalization median absolute percentage errors ranged from 16 to 36%. For those same comparisons, the CalCAT ensemble errors were between 30 and 59%. CONCLUSION: COVIDNearTerm is a simple and useful tool for predicting near-term COVID-19 hospitalizations.
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spelling pubmed-91610462022-06-16 COVIDNearTerm: A simple method to forecast COVID-19 hospitalizations Olshen, Adam B. Garcia, Ariadna Kapphahn, Kristopher I. Weng, Yingjie Vargo, Jason Pugliese, John A. Crow, David Wesson, Paul D. Rutherford, George W. Gonen, Mithat Desai, Manisha J Clin Transl Sci Research Article INTRODUCTION: COVID-19 has caused tremendous death and suffering since it first emerged in 2019. Soon after its emergence, models were developed to help predict the course of various disease metrics, and these models have been relied upon to help guide public health policy. METHODS: Here we present a method called COVIDNearTerm to “forecast” hospitalizations in the short term, two to four weeks from the time of prediction. COVIDNearTerm is based on an autoregressive model and utilizes a parametric bootstrap approach to make predictions. It is easy to use as it requires only previous hospitalization data, and there is an open-source R package that implements the algorithm. We evaluated COVIDNearTerm on San Francisco Bay Area hospitalizations and compared it to models from the California COVID Assessment Tool (CalCAT). RESULTS: We found that COVIDNearTerm predictions were more accurate than the CalCAT ensemble predictions for all comparisons and any CalCAT component for a majority of comparisons. For instance, at the county level our 14-day hospitalization median absolute percentage errors ranged from 16 to 36%. For those same comparisons, the CalCAT ensemble errors were between 30 and 59%. CONCLUSION: COVIDNearTerm is a simple and useful tool for predicting near-term COVID-19 hospitalizations. Cambridge University Press 2022-04-19 /pmc/articles/PMC9161046/ /pubmed/35720970 http://dx.doi.org/10.1017/cts.2022.389 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted re-use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Olshen, Adam B.
Garcia, Ariadna
Kapphahn, Kristopher I.
Weng, Yingjie
Vargo, Jason
Pugliese, John A.
Crow, David
Wesson, Paul D.
Rutherford, George W.
Gonen, Mithat
Desai, Manisha
COVIDNearTerm: A simple method to forecast COVID-19 hospitalizations
title COVIDNearTerm: A simple method to forecast COVID-19 hospitalizations
title_full COVIDNearTerm: A simple method to forecast COVID-19 hospitalizations
title_fullStr COVIDNearTerm: A simple method to forecast COVID-19 hospitalizations
title_full_unstemmed COVIDNearTerm: A simple method to forecast COVID-19 hospitalizations
title_short COVIDNearTerm: A simple method to forecast COVID-19 hospitalizations
title_sort covidnearterm: a simple method to forecast covid-19 hospitalizations
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9161046/
https://www.ncbi.nlm.nih.gov/pubmed/35720970
http://dx.doi.org/10.1017/cts.2022.389
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